View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_high_25 (Length: 256)
Name: NF1266_high_25
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8139520 - 8139748
Alignment:
| Q |
1 |
catattcactcacaaccataaatgagttttaactctgattgttctaacag--gtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139520 |
catattcactcacaaccataaatgagttttaactctgattgttctaacagtggtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaag |
8139619 |
T |
|
| Q |
99 |
tgccgggcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagtgttg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139620 |
tgccgggcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagtgtta |
8139719 |
T |
|
| Q |
199 |
ttaaatatccggtatatcggcgctatatc |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
8139720 |
ttaaatatccggtgtatcggcgctatatc |
8139748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 7499176 - 7499018
Alignment:
| Q |
10 |
tcacaaccataaatgagttttaactctgattgttctaacag--gtcgtcgctctctg--------ggaacatcatggcaagaacaagtgcagaagcaagt |
99 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
7499176 |
tcacaaccataaacgagtttttattctgattgttctaacagtggtcgtcgctctctgattgtgtgggaatatcatggcaagaacaagtgcagaagaaagt |
7499077 |
T |
|
| Q |
100 |
gccgggcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtc |
158 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
7499076 |
tccgggtgggtaaagtggcatctaatgtcatggaaaaaaattggtaaactaaagaggtc |
7499018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 7502172 - 7502081
Alignment:
| Q |
78 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatgg-aaaataattggtaaactaacgaggtccttttctctt |
168 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||| || ||||||||||||| |||| |||||||||||||| ||| ||| ||| |||| |
|
|
| T |
7502172 |
aagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaaaaaattggtaaactaaagagttccctttttctt |
7502081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 9130084 - 9130120
Alignment:
| Q |
189 |
atcagtgttgttaaatatccggtatatcggcgctata |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9130084 |
atcagtgttgttaaatatccggcatatcagcgctata |
9130120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University