View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_high_27 (Length: 252)
Name: NF1266_high_27
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 34100206 - 34100148
Alignment:
| Q |
184 |
gggaagccctagaaagacaagtaagtatatatagttagtaataataactgagagtataa |
242 |
Q |
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| T |
34100206 |
gggaagccctagagagacaagtaagtatatatagttagtaataataactgagagtataa |
34100148 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34100387 - 34100338
Alignment:
| Q |
1 |
caacaagagatattcattaacagctagaattgaaaagttaaaaagaagaa |
50 |
Q |
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| T |
34100387 |
caacaagagatattcattaacagctagaattgaaaaggaaaaaagaagaa |
34100338 |
T |
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