View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_high_30 (Length: 251)
Name: NF1266_high_30
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 55878304 - 55878085
Alignment:
| Q |
5 |
tttagtctttgggaaagtgaccttagttttaagaggttttgatatcacaactccacaccacctataaaaactatacagtcccaaccaagataaatgattc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
55878304 |
tttagtctttgggaaagtgaccttagttttaaaagcctttgatatcacaactccacaccacctataaaaactatacagtcccaat-aagaaaaaagattc |
55878206 |
T |
|
| Q |
105 |
aattaatcttgaatttccctca--cacacacattgagcatggaaactaataaaagccaacaggaagcatcaaataaggcatgtgttaacaacatgaaatc |
202 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55878205 |
aattaatctttgttttccctcagacacacacattgatcatggaaataaataaaagccaataggaagcagcaaataaggcatgtgttaacaacatgaaatc |
55878106 |
T |
|
| Q |
203 |
tcatttattaaaacttaaaat |
223 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
55878105 |
tcatatattaaaacttaaaat |
55878085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University