View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266_high_4 (Length: 529)

Name: NF1266_high_4
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266_high_4
NF1266_high_4
[»] chr3 (42 HSPs)
chr3 (21-500)||(8539204-8539683)
chr3 (23-242)||(27920218-27920436)
chr3 (58-242)||(27954303-27954483)
chr3 (22-197)||(17744443-17744615)
chr3 (22-197)||(19045763-19045935)
chr3 (23-198)||(28151670-28151841)
chr3 (22-199)||(11421007-11421180)
chr3 (22-169)||(28161925-28162069)
chr3 (22-169)||(28185968-28186112)
chr3 (22-200)||(28149985-28150160)
chr3 (23-202)||(28037455-28037631)
chr3 (22-200)||(27458794-27458965)
chr3 (419-501)||(17744964-17745046)
chr3 (419-501)||(19046284-19046366)
chr3 (422-500)||(27919857-27919935)
chr3 (438-487)||(28151345-28151394)
chr3 (393-488)||(28083130-28083219)
chr3 (393-488)||(28135502-28135591)
chr3 (23-143)||(28479813-28479930)
chr3 (23-143)||(28508996-28509113)
chr3 (419-500)||(11420574-11420655)
chr3 (106-195)||(27776545-27776634)
chr3 (419-487)||(18079122-18079190)
chr3 (420-500)||(28036949-28037029)
chr3 (272-319)||(27920073-27920120)
chr3 (429-500)||(28003705-28003776)
chr3 (419-477)||(27249808-27249866)
chr3 (442-500)||(28149272-28149330)
chr3 (203-263)||(28151562-28151620)
chr3 (424-500)||(26127945-26128021)
chr3 (424-500)||(26177995-26178071)
chr3 (419-478)||(27459351-27459410)
chr3 (393-487)||(28185321-28185409)
chr3 (97-151)||(27378544-27378598)
chr3 (422-484)||(28084579-28084641)
chr3 (447-500)||(26110974-26111027)
chr3 (447-500)||(26233320-26233373)
chr3 (447-500)||(26629170-26629223)
chr3 (201-241)||(27459011-27459051)
chr3 (460-500)||(27979987-27980027)
chr3 (447-487)||(28055926-28055966)
chr3 (447-487)||(28066351-28066391)
[»] scaffold0257 (1 HSPs)
scaffold0257 (27-200)||(19095-19265)
[»] chr2 (2 HSPs)
chr2 (24-198)||(8020852-8021021)
chr2 (97-153)||(22393515-22393571)
[»] scaffold0043 (1 HSPs)
scaffold0043 (97-153)||(52825-52881)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Original strand, 8539204 - 8539683
Alignment:
Q  21 acatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539204 acatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactg 8539303  T
Q  121 atccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539304 atccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaa 8539403  T
Q  221 attcatataaaagaatgatattttttcatgaattcttaatattataggaagcaaaagaattcaaatgtcaaaagaagtagactccagttatgttctcttt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539404 attcatataaaagaatgatattttttcatgaattcttaatattataggaagcaaaagaattcaaatgtcaaaagaagtagactccagttatgttctcttt 8539503  T
Q  321 atatcaaaatgactcttataaatgaaatttcatggaaatttaataataaaaaacatgacaacaatacttgagggctttgttaaataaaataaactcactt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539504 atatcaaaatgactcttataaatgaaatttcatggaaatttaataataaaaaacatgacaacaatacttgagggctttgttaaataaaataaactcactt 8539603  T
Q  421 ttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539604 ttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 8539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 27920436 - 27920218
Alignment:
Q  23 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaa---cttaagaaaataaaact 119  Q
    ||||||||||||| || |||  |||| ||||||||||||||||||| |||||||   ||||||||||| |||  ||||||   |||| ||||| || |||    
T  27920436 atcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttca---aaatgaaaagg-tgatgaggtaattgcttatgaaaacaacact 27920341  T
Q  120 gatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaa 219  Q
     |||||| || | ||||||||||| |  |||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  27920340 aatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaa 27920241  T
Q  220 aattcatataaaagaatgatatt 242  Q
    |||||||||||||||||||||||    
T  27920240 aattcatataaaagaatgatatt 27920218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 27954483 - 27954303
Alignment:
Q  58 agaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgtta 157  Q
    ||||||||||| |||||||   ||||||||||| |||  |||||||||| ||||| || ||| |||||| || | ||||||||||| |  ||||||||||    
T  27954483 agaagagagttaaacttca---aaatgaaaagg-tgatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgtta 27954388  T
Q  158 ctagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt 242  Q
    |||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27954387 ctagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt 27954303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 17744443 - 17744615
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||||||||||||   |||||||||| | ||  |||||||||||||||||||||  ||    
T  17744443 catcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcga 17744539  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg 197  Q
    ||||| |||| || |||||| | |  |||||| || |||||||||||||| | || ||||||||||||||||||||    
T  17744540 tccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 19045763 - 19045935
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||||||||||||   |||||||||| | ||  |||||||||||||||||||||  ||    
T  19045763 catcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcga 19045859  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg 197  Q
    ||||| |||| || |||||| | |  |||||| || |||||||||||||| | || ||||||||||||||||||||    
T  19045860 tccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 19045935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 28151841 - 28151670
Alignment:
Q  23 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 122  Q
    ||||||||||||| || |||| |||| | ||||||| ||||||| | |||||||   |||| ||||||| ||  |||||||||||||||||||||  |||    
T  28151841 atcatcatttagagaaactga-caaaagatgggaaacaagagagctaaacttca---aaataaaaagggcgatgaggtaacttaagaaaataaaagcgat 28151746  T
Q  123 ccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 198  Q
    |||| |||||||||||||||| |  |||||||||||||||||||||||| | || |||||||||||||||||||||    
T  28151745 ccaaagattcttcaccttgatcatcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 28151670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 11421180 - 11421007
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    ||||||||||||||  | |||| ||||  |||||||||||||||||||||||||    |||||||||||||||    |||||||||||||||||||||||    
T  11421180 catcatcatttagagcaactga-caaacagtgggaaagaagagagttcaacttct---aaatgaaaagggtgatgtcgtaacttaagaaaataaaactga 11421085  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggta 199  Q
    ||||| || || |||||||||| |  |||||  |||||||||||||| || | ||||||||||||||||||| |||||    
T  11421084 tccaaagagtcatcaccttgatcatcattagccttactagtttcctgacagattttaacatcaacatcttgaatggta 11421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 28162069 - 28161925
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
T  28162069 catcgtcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28161973  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgc 169  Q
    ||||| || ||||||||||||| |  ||||||||||||||||||||||    
T  28161972 tccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 28186112 - 28185968
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||||||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
T  28186112 catcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28186016  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgc 169  Q
    ||||| || ||||||||||||| |  || |||||||||||||||||||    
T  28186015 tccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 28150160 - 28149985
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
T  28150160 catcctcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28150064  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 200  Q
    ||| | || ||||||||||||| |  |||||||||||||||||||||| |    ||||||| ||| |||||||||||||    
T  28150063 tcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaa 28149985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 28037631 - 28037455
Alignment:
Q  23 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 122  Q
    |||||||||| || || ||||||| | ||||| ||||||| ||||| |||||||   |||||||||||||||  ||||||||| ||||||||| ||||||    
T  28037631 atcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttca---aaatgaaaagggtgatgaggtaactttagaaaataacactgat 28037535  T
Q  123 ccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaaca 202  Q
    |||| || |||| |||||||  |  ||||||||||||||||||  ||||   ||| | ||||||||||| ||||||||||    
T  28037534 ccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccagtttttgagatcaacatcttcagtggtaaca 28037455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 27458794 - 27458965
Alignment:
Q  22 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 121  Q
    |||||||||||||| || |||||||||  || | ||||||||| ||| |||||||   ||||||||||||||| ||| |||||    || || | | |||    
T  27458794 catcatcatttagagaaactgaacaaaaagttgcaaagaagagggttaaacttca---aaatgaaaagggtgataagataact----aatatcagattga 27458886  T
Q  122 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 200  Q
    ||||| || ||||||||||||| |   ||||| || |||||||||||||| | ||||||||||||||||||||||||||    
T  27458887 tccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaa 27458965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 501
Target Start/End: Original strand, 17744964 - 17745046
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgcttat 501  Q
    ||||||||||| || ||||||| || | ||||||||||||||||| |||||||||||||||||||||||   |||||||||||    
T  17744964 ttttgaatgagctgctgaagttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttat 17745046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 501
Target Start/End: Original strand, 19046284 - 19046366
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgcttat 501  Q
    ||||||||||| || ||||||| || | ||||||||||||||||| |||||||||||||||||||||||   |||||||||||    
T  19046284 ttttgaatgagctgctgaagttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttat 19046366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 500
Target Start/End: Complemental strand, 27919935 - 27919857
Alignment:
Q  422 tgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    ||||||||||| |||||||||||| |||||||||||||||||  ||||||||||||||| |||||  | ||||||||||    
T  27919935 tgaatgaggtgctgaagtttttgtcttggcattagctgatgtgattccttcttcaacacatattttgataccctgctta 27919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 28151394 - 28151345
Alignment:
Q  438 gtttttgtattggcattagctgatgtagttccttcttcaacacttatttc 487  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28151394 gtttttgtcttggcattagctgatgtagttccttcttcaacacttatttc 28151345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 488
Target Start/End: Complemental strand, 28083219 - 28083130
Alignment:
Q  393 ggctttgttaaataaaataaactcacttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttca 488  Q
    |||| ||||||||||||||||||||||| |||      |||||  ||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  28083219 ggctatgttaaataaaataaactcacttgtga------tgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttca 28083130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 488
Target Start/End: Complemental strand, 28135591 - 28135502
Alignment:
Q  393 ggctttgttaaataaaataaactcacttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttca 488  Q
    |||| ||||||||||||||||||||||| |||      |||||  ||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  28135591 ggctatgttaaataaaataaactcacttgtga------tgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttca 28135502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 28479813 - 28479930
Alignment:
Q  23 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 122  Q
    ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||||| |||||||||||||| ||||    
T  28479813 atcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggtaaattaagaaaataaaattgat 28479909  T
Q  123 ccaaggattcttcaccttgat 143  Q
    |||| || |||||||||||||    
T  28479910 ccaaagagtcttcaccttgat 28479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 28508996 - 28509113
Alignment:
Q  23 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 122  Q
    ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||||| |||||||||||||| ||||    
T  28508996 atcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggtaaattaagaaaataaaattgat 28509092  T
Q  123 ccaaggattcttcaccttgat 143  Q
    |||| || |||||||||||||    
T  28509093 ccaaagagtcttcaccttgat 28509113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 11420655 - 11420574
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||| ||||||||| ||| ||| |||| ||||||||||| ||||  ||||||||||| |||||||||| || ||||||||||    
T  11420655 ttttaaatgaggtggtgatgttattgttttggcattagccgatgaggttccttcttcgacacttattttaataccctgctta 11420574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 27776634 - 27776545
Alignment:
Q  106 aagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagt 195  Q
    |||||||||||| |||||||| || | ||||||||||| |  |||||| ||||||||||||||| |   || ||||||||||||||||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagt 27776545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 18079122 - 18079190
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttc 487  Q
    ||||||||||  |||||| ||| |||| ||||||||||| |||| |||||||| |||||||||||||||    
T  18079122 ttttgaatgatttgatgatgttattgtcttggcattagccgatgaagttcctttttcaacacttatttc 18079190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 28037029 - 28036949
Alignment:
Q  420 tttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    ||||| |||| |||||| ||| |||||||| || |||||||||| |||||||||  |||||||||||| | ||||||||||    
T  28037029 tttgagtgagctgatgatgttattgtattgtcagtagctgatgttgttccttctaaaacacttatttcgataccctgctta 28036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 27920120 - 27920073
Alignment:
Q  272 caaaagaattcaaatgtcaaaagaagtagactccagttatgttctctt 319  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  27920120 caaaagaatccaaatgtcaaaagtagtagactccaattatgttctctt 27920073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 500
Target Start/End: Complemental strand, 28003776 - 28003705
Alignment:
Q  429 ggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    ||||||||  || |||| |||||||||||||||||  |||| |||||||||||| |||||| ||||||||||    
T  28003776 ggtgatgattttattgtcttggcattagctgatgtgattccatcttcaacacttttttcaataccctgctta 28003705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 27249866 - 27249808
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaa 477  Q
    ||||||||||||||||||   | |||| ||||||||||||||||| |||||||||||||    
T  27249866 ttttgaatgaggtgatgatagtattgtcttggcattagctgatgtggttccttcttcaa 27249808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 28149330 - 28149272
Alignment:
Q  442 ttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||| |||||||||||||| || |||||||||||| |||||||||| | ||||||||||    
T  28149330 ttgtcttggcattagctgacgtggttccttcttcagcacttatttcgataccctgctta 28149272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 28151620 - 28151562
Alignment:
Q  203 tcaccatcttcctacaaaattcatataaaagaatgatattttttcatgaattcttaatatt 263  Q
    ||||| ||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||    
T  28151620 tcaccttcttcctacaaaattcaaataaaagaatgatatcatt--atgaattcttaatatt 28151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 26127945 - 26128021
Alignment:
Q  424 aatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||||| ||| || ||| |||| ||||||||| |||||| |||||||||||||||| ||||||  | ||||||||||    
T  26127945 aatgagttgacgatgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgctta 26128021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 26177995 - 26178071
Alignment:
Q  424 aatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||||| ||| || ||| |||| ||||||||| |||||| |||||||||||||||| ||||||  | ||||||||||    
T  26177995 aatgagttgacgatgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgctta 26178071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 27459351 - 27459410
Alignment:
Q  419 ttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaac 478  Q
    |||||||||| ||||||  ||| || | ||||||||||||||||| ||||||||||||||    
T  27459351 ttttgaatgaagtgatggtgttattatcttggcattagctgatgtggttccttcttcaac 27459410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 487
Target Start/End: Complemental strand, 28185409 - 28185321
Alignment:
Q  393 ggctttgttaaataaaataaactcacttttgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttatttc 487  Q
    |||||||||||||||||||||||||| | |||      |||||  ||| || | |||||||||| ||| ||||||||||||| ||||||||||||    
T  28185409 ggctttgttaaataaaataaactcacctgtga------tgatgtcgttcttctcttggcattagatgaagtagttccttcttgaacacttatttc 28185321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 27378598 - 27378544
Alignment:
Q  97 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta 151  Q
    ||||||| ||||||||||||| ||||||||  | ||||||||||||||| |||||    
T  27378598 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatta 27378544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 28084641 - 28084579
Alignment:
Q  422 tgaatgaggtgatgaagtttttgtattggcattagctgatgtagttccttcttcaacacttat 484  Q
    |||||||| |||||| ||| |||| ||| ||| || |||||||||||||||||||| ||||||    
T  28084641 tgaatgagttgatgatgttattgttttgtcataagttgatgtagttccttcttcaaaacttat 28084579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 26110974 - 26111027
Alignment:
Q  447 ttggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||||||||||||||||| |||||||||||||  |||| || | ||||||||||    
T  26110974 ttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgctta 26111027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 26233320 - 26233373
Alignment:
Q  447 ttggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||||||||||||||||| |||||||||||||  |||| || | ||||||||||    
T  26233320 ttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgctta 26233373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Complemental strand, 26629223 - 26629170
Alignment:
Q  447 ttggcattagctgatgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    |||||||||||||||||  ||||||||||||| ||||| || | ||||||||||    
T  26629223 ttggcattagctgatgtgtttccttcttcaacgcttatctcgataccctgctta 26629170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 27459011 - 27459051
Alignment:
Q  201 catcaccatcttcctacaaaattcatataaaagaatgatat 241  Q
    |||| ||||| |||||||||||||| |||||||||||||||    
T  27459011 catcgccatcgtcctacaaaattcaaataaaagaatgatat 27459051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 27980027 - 27979987
Alignment:
Q  460 atgtagttccttcttcaacacttatttcaacaccctgctta 500  Q
    ||||||||||||||||||||||||| || | ||||||||||    
T  27980027 atgtagttccttcttcaacacttatctcgataccctgctta 27979987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 28055966 - 28055926
Alignment:
Q  447 ttggcattagctgatgtagttccttcttcaacacttatttc 487  Q
    |||||||||| || |||||||||||||| ||||||||||||    
T  28055966 ttggcattagatgttgtagttccttcttgaacacttatttc 28055926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 28066391 - 28066351
Alignment:
Q  447 ttggcattagctgatgtagttccttcttcaacacttatttc 487  Q
    |||||||||| || |||||||||||||| ||||||||||||    
T  28066391 ttggcattagatgttgtagttccttcttgaacacttatttc 28066351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19265 - 19095
Alignment:
Q  27 tcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaa 126  Q
    ||||||||| || ||||||||| |||| || ||||||||||| || ||||   |||||||||||||||  ||||||||||||||||||| | ||||||||    
T  19265 tcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttca---aaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaa 19169  T
Q  127 ggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 200  Q
     || ||||||||||||| |  | || ||||||||||||||||| |    |||||||||||||||||||||||||    
T  19168 agagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaa 19095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 8021021 - 8020852
Alignment:
Q  24 tcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatc 123  Q
    |||||||||||| || ||||  ||||| ||||||||||||  ||| |||||||   |||||||||||| ||  || ||||||||||||| ||||| ||||    
T  8021021 tcatcatttagagaaactgagaaaagg-tgggaaagaagaaggtt-aacttca---aaatgaaaagggcgatgagataacttaagaaaagaaaaccgatc 8020927  T
Q  124 caaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 198  Q
    ||| |||||||||||| |||    |||||||||||||||||||||||| | || |||||||||||||||||||||    
T  8020926 caaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 8020852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 22393571 - 22393515
Alignment:
Q  97 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 153  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  22393571 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 22393515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 52825 - 52881
Alignment:
Q  97 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 153  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  52825 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 52881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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