View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_high_5 (Length: 453)
Name: NF1266_high_5
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 39011525 - 39011083
Alignment:
| Q |
11 |
cataggtaaacttggaacttcattattcaaatgtctacggtcatctgtcttggaatttgaaccaagcaatggaattgccgtatcatcatcacccaataat |
110 |
Q |
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| T |
39011525 |
cataggtaaacttggaacttcattattcaaatgtctacggtcatctgtcttggaatttgaaccaagcaatggaattgccgtatcatcatcacccaataat |
39011426 |
T |
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| Q |
111 |
ttgacaccgttctccaaattcgtgacaccatctttagcagtatgttcagaaacacaagggctaacaacacgaacaccttccctcttatctttcttattct |
210 |
Q |
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| T |
39011425 |
ttgacaccgttctccaaattcgcgacaccatctttagcagtatgttcagaaacacaagggctaacaacacgaacaccttccctcttatctttcttattct |
39011326 |
T |
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| Q |
211 |
ccaacaattggaacagggaattacaaggtaaaataatcccattattatcaccaccagaaccaactaaagcattattcacaatgccaatagattccacctg |
310 |
Q |
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| T |
39011325 |
ccaacaattggaactgggaattacaaggtaaaataatcccattattatcaccaccagaaccaactaaagcattattcacaatgccaatagattccacctg |
39011226 |
T |
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| Q |
311 |
acgaagcgaaccatgaggtaacaatttttcattcggtctagaatcttccaatgcagaaacatcaacactaagaaaccagcttttgttgacaccaataaaa |
410 |
Q |
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| T |
39011225 |
acgaagcgaaccatgaggtaacaatttttcattcggtctagaatcttccaatgcagaaacatcaacactaagaaaccagcttttgttgacaccaataaaa |
39011126 |
T |
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| Q |
411 |
gcacttcgcacaaccattgaatcagataagtgataaaagtgac |
453 |
Q |
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| T |
39011125 |
gcacttcgcacaaccattgaatcagataagtgataaaagtgac |
39011083 |
T |
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