View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_high_8 (Length: 374)
Name: NF1266_high_8
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 99 - 363
Target Start/End: Complemental strand, 44694039 - 44693774
Alignment:
| Q |
99 |
caccagagtttgaatctggtgtc-tccaacttcctagacccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgc |
197 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694039 |
caccagagtttgaatctggtgtcctccaacttcctagtcccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgc |
44693940 |
T |
|
| Q |
198 |
taatgactagaacttcctttgttcctgatcgttggtctttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693939 |
taatgactagaacttcctttgttcctgatcgttggtctttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttt |
44693840 |
T |
|
| Q |
298 |
taattgcattttttacccttgttgtccttattcacaattttaatcttaaattttcataatgttcat |
363 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693839 |
tgattgcattttttacccttgttgtccttattcacaattttaatcttaaattttcataatgttcat |
44693774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University