View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_10 (Length: 497)
Name: NF1266_low_10
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_10 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 7989 - 8372
Alignment:
| Q |
10 |
attattctaaaagaggtgacagctatagagtagttaacagattnnnnnnnnnntgtcttcagcaacaatagttggagaatggagtatttattatattaaa |
109 |
Q |
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| T |
7989 |
attattctaaaagaggtgacagctatagagtagttaacagat--aaaaaaaaatgtcttcagcaacaatagttggagaatggagtatttattatattaaa |
8086 |
T |
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| Q |
110 |
caaactttcaatattgttttggaacgtttacttctaatctgatacaaaatgaaagaagaaagcaaagtaacaataggtaatggaagaggttaatttgtgt |
209 |
Q |
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| T |
8087 |
caaactttcaatattgttttggaacgtttacttctaatctgatacaaaatgaaacaa-------------caataggtaatggaagaggttaatttgtgt |
8173 |
T |
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| Q |
210 |
atgagaatgagcatagttattgaagttcttgtg---gctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagat |
306 |
Q |
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| T |
8174 |
atgagaatgagcatagttattgaagttcttgtgatggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagat |
8273 |
T |
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| Q |
307 |
cactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaac |
405 |
Q |
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| T |
8274 |
cactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaac |
8372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 206 - 405
Target Start/End: Original strand, 19205146 - 19205345
Alignment:
| Q |
206 |
gtgtatgagaatgagcatagttattgaagttcttgtggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaaga |
305 |
Q |
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| T |
19205146 |
gtgtttgagaatgagcatagttgttgaagttatggttgctcttgtagcagttttggtggcactgatccattttttacatgttttagttttgagactaaga |
19205245 |
T |
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| Q |
306 |
tcactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaac |
405 |
Q |
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| T |
19205246 |
tcattaagagcaaagcttcatagacagggtattcatggaccttctcctgatttttactttggtaatattaaagagatgaagacacttttactccaacaac |
19205345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 213 - 405
Target Start/End: Original strand, 25191960 - 25192152
Alignment:
| Q |
213 |
agaatgagcatagttattgaagttcttgtggctctaggagcagttttggtttcattgatccattttttgaatgttttgattttgagaccaagatcactaa |
312 |
Q |
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|||||||||||| | |||||||| | |||||||| | |||||| |||||| ||||||||||||||||| | |||||| ||| |||||||| |||| | | |
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| T |
25191960 |
agaatgagcataagtgttgaagttgtggtggctcttgcagcagtattggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattga |
25192059 |
T |
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| Q |
313 |
gagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaaagaaatgaagacccttttactccaacaac |
405 |
Q |
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| T |
25192060 |
gagcaaagctacataggcagggtattcatggcccttctcctcacttttacttgggtaatatccaagaaatgaagacccttttacaccaacaac |
25192152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 277 - 397
Target Start/End: Original strand, 1760372 - 1760492
Alignment:
| Q |
277 |
ttttgaatgttttgattttgagaccaagatcactaagagcaaagcttcataggcaaggtattgatggtccttctcctcatttctactttggtaacatcaa |
376 |
Q |
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| T |
1760372 |
ttttgcatgtttttgttttgaagccaagatcccttagagctaagcttcaaaaacaaggaattgatggaccttctcctcacttctactttggcaacatctc |
1760471 |
T |
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| Q |
377 |
agaaatgaagacccttttact |
397 |
Q |
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| T |
1760472 |
agaaatgaagagccttttact |
1760492 |
T |
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