View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266_low_11 (Length: 477)

Name: NF1266_low_11
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266_low_11
NF1266_low_11
[»] chr1 (3 HSPs)
chr1 (28-465)||(7554792-7555230)
chr1 (359-465)||(19467455-19467561)
chr1 (359-406)||(30827724-30827771)
[»] chr6 (6 HSPs)
chr6 (104-465)||(9411801-9412156)
chr6 (361-411)||(6596310-6596360)
chr6 (359-411)||(10579173-10579225)
chr6 (359-404)||(6436837-6436882)
chr6 (359-404)||(7993631-7993676)
chr6 (111-167)||(6588601-6588657)
[»] chr4 (13 HSPs)
chr4 (100-465)||(8186383-8186745)
chr4 (106-225)||(21833568-21833687)
chr4 (199-302)||(1481523-1481626)
chr4 (359-462)||(1755479-1755582)
chr4 (106-224)||(1601179-1601300)
chr4 (359-465)||(571256-571362)
chr4 (359-465)||(7225185-7225290)
chr4 (103-136)||(7225501-7225534)
chr4 (104-136)||(8183638-8183670)
chr4 (106-225)||(7308230-7308349)
chr4 (364-462)||(21833304-21833402)
chr4 (365-398)||(2373565-2373598)
chr4 (359-395)||(2621502-2621538)
[»] chr3 (4 HSPs)
chr3 (101-225)||(513939-514063)
chr3 (106-213)||(51763672-51763779)
chr3 (380-462)||(1657474-1657556)
chr3 (359-401)||(51763487-51763529)
[»] chr8 (3 HSPs)
chr8 (365-462)||(32151900-32151997)
chr8 (109-269)||(18314854-18315014)
chr8 (359-399)||(18314728-18314768)
[»] chr5 (5 HSPs)
chr5 (188-299)||(28673460-28673571)
chr5 (362-410)||(17205662-17205710)
chr5 (188-299)||(28695710-28695821)
chr5 (411-462)||(32268513-32268564)
chr5 (411-471)||(41900512-41900572)
[»] chr7 (1 HSPs)
chr7 (359-465)||(7977799-7977905)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 28 - 465
Target Start/End: Original strand, 7554792 - 7555230
Alignment:
Q  28 cagtttaatctcactaagtgaaggatagttcttaatgagtgcaaacagcgttgcgaagtttcttgattcgtgatcggtaaaggataaagacctcaatgtt 127  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554792 cagtttaatctcactaagtgaaggatagttcttaacgagtgcaaacagcgttgcgaagtttcttgattcgtgatcggtaaaggataaagacctcaatgtt 7554891  T
Q  128 ggtctctcatggagagctgaaaaaa-tgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttgcagttcttaaacaagtga 226  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554892 ggtctctcatggagagctgaaaaaaatgccagctttggttatgccatcacactcaaacatgataacctcttggagaagcttgcagttcttaaacaagtga 7554991  T
Q  227 acaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttac 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554992 acaagtgatatgtcgttgatgtagtaatggtcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttac 7555091  T
Q  327 tatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555092 tatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatc 7555191  T
Q  427 cattttggaacaagtgagtgaggttaaagttgtaatatt 465  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7555192 cattttggaacaagtgagtgaggttaaagttgtaatatt 7555230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 19467561 - 19467455
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 458  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||| |||| || |||||| |    | || | | |||||||||| ||||| |||||||    
T  19467561 aggttgagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttg 19467462  T
Q  459 taatatt 465  Q
    |||||||    
T  19467461 taatatt 19467455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 30827724 - 30827771
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaag 406  Q
    |||||||||| || ||||||||||||||| || |||||||||||||||    
T  30827724 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 104 - 465
Target Start/End: Original strand, 9411801 - 9412156
Alignment:
Q  104 gtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaa 203  Q
    |||||||| ||||||||||| ||||||||||||  |||||| |||| ||||||  |||||||||||| |  |||   |||||||||||||||||||||||    
T  9411801 gtaaaggacaaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggttatgctacgacagcgaaacatgataacctcttggagaa 9411900  T
Q  204 gcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagt 303  Q
    |||| ||||||||||||||||  |  |||||| ||||||||||||||| |||  |||||||||||||| ||||||||||| |||||| ||||||||||||    
T  9411901 gcttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagt 9412000  T
Q  304 ctccaacccattaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaac 403  Q
    ||| | || |||||| |||   ||||||||||||||||||   |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  9412001 ctctaccctattaagaaag---ctatgatccttaaattta---cggggataacacaggttgagttcttcaagcaaagggaaacattcagcaatgagtaac 9412094  T
Q  404 aagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 465  Q
    ||||||||||||||||||||| ||||| | ||  |||||| |||||||||||||||||||||    
T  9412095 aagtcattgctattgatagaacccattcttgaggaagtgaatgaggttaaagttgtaatatt 9412156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 6596360 - 6596310
Alignment:
Q  361 gttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 411  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  6596360 gttgagttctttgagcaatgggaaacaatcagcaatgagtaacaagtcatt 6596310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 10579225 - 10579173
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 411  Q
    ||||||||||||| |||||| |||||||| || |||| |||||||||||||||    
T  10579225 aggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatt 10579173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 6436837 - 6436882
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 404  Q
    |||||||||| || ||||||||||||||| || |||||||||||||    
T  6436837 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 7993676 - 7993631
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 404  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||    
T  7993676 aggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 6588657 - 6588601
Alignment:
Q  111 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggtta 167  Q
    |||||||| ||||| ||||||||||| ||||||| |||  ||||||||| |||||||    
T  6588657 ataaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta 6588601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 100 - 465
Target Start/End: Complemental strand, 8186745 - 8186383
Alignment:
Q  100 atcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttgg 199  Q
    |||||||||||||||||||||||| |||||||||||    || || |||  |||||||||||||||||    |  ||||| ||||||||||||||||| |    
T  8186745 atcggtaaaggataaagacctcaacgttggtctctcccatagggcagaagcaatgcctgctttggttaactgagaacacttaaacatgataacctcttcg 8186646  T
Q  200 agaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaa 299  Q
    ||| |||| || ||||| |||||||||| |||  || |||||||||| |||| ||| | ||| ||||||| | ||   |||||| |||||||||||||||    
T  8186645 agatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtgccaatgaaa 8186546  T
Q  300 gagtctccaacccattaaggaagttactatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgag 399  Q
    ||| ||| |  |||| || |||| ||||  |||  || || |  |||   || | ||  || | ||||||||| || ||||| ||||| || || |||||    
T  8186545 gagcctcaactccatcaaagaagatactgagattgttgaactcttta---gggttactgagatcgagttcttctaggaaaggaaaacaatcggcgatgag 8186449  T
Q  400 taacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatatt 465  Q
     || | |||| ||||||||||||| || || |||||||| ||||||||||| ||||||||||||||    
T  8186448 gaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatt 8186383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 21833687 - 21833568
Alignment:
Q  106 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagc 205  Q
    |||||||||||| |||||||||||||||||| |||||||||||  ||||||| || || ||||   |||||| ||||||||||| |||||||  ||||||    
T  21833687 aaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaagc 21833588  T
Q  206 ttgcagttcttaaacaagtg 225  Q
    || || ||||| | ||||||    
T  21833587 ttacaattctttagcaagtg 21833568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 1481523 - 1481626
Alignment:
Q  199 gagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaa 298  Q
    ||||| |||||||||||| ||||| |||| |||  | |||||||||| ||||||||| ||||||||||||| | ||  ||||||| | ||||||||||||    
T  1481523 gagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaa 1481622  T
Q  299 agag 302  Q
    ||||    
T  1481623 agag 1481626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 1755479 - 1755582
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 458  Q
    |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||| || |  | | || |||||||| ||||| ||||| |||||||    
T  1755479 aggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 1755578  T
Q  459 taat 462  Q
    ||||    
T  1755579 taat 1755582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 1601179 - 1601300
Alignment:
Q  106 aaaggataaagacctcaatgttggtctctcatggagagctga---aaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggaga 202  Q
    ||||||||||||||||||||||||||||||| ||||||| ||   || |||| | || | |||||| |||| ||| || | |||||| |||||||  |||    
T  1601179 aaaggataaagacctcaatgttggtctctcacggagagcagaagcaacaatgtcagcatcggttattccataacagtcgagcatgatgacctcttcaaga 1601278  T
Q  203 agcttgcagttcttaaacaagt 224  Q
     ||||| |||||||||||||||    
T  1601279 tgcttgaagttcttaaacaagt 1601300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 571256 - 571362
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 458  Q
    |||| |||||||||||||||||||||||| || |  ||||| ||||||||  || || ||||||||||| | | ||||||| |||| || || |||||||    
T  571256 aggtggagttcttcgagcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttg 571355  T
Q  459 taatatt 465  Q
    |||||||    
T  571356 taatatt 571362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 7225290 - 7225185
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 458  Q
    |||| |||||||||||||||||||||||| || || ||||| |||| |||| ||||| ||| |||||  | | ||||||| ||||| ||||| |||||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaat-aaatgtggaacatgtgagagaggtcaaagttg 7225192  T
Q  459 taatatt 465  Q
    |||||||    
T  7225191 taatatt 7225185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 7225534 - 7225501
Alignment:
Q  103 ggtaaaggataaagacctcaatgttggtctctca 136  Q
    ||||||||||||||||||||||||||||||||||    
T  7225534 ggtaaaggataaagacctcaatgttggtctctca 7225501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 8183670 - 8183638
Alignment:
Q  104 gtaaaggataaagacctcaatgttggtctctca 136  Q
    |||||||||||||||||||||||||||||||||    
T  8183670 gtaaaggataaagacctcaatgttggtctctca 8183638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 7308230 - 7308349
Alignment:
Q  106 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagc 205  Q
    |||||||||||| | |||||||||||||||||| ||||| | |  ||||||||| |||||||    || ||| || || |||||  ||||||  ||||||    
T  7308230 aaaggataaagagcgcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggttagttgatgacagtctaatatgatggcctcttccagaagc 7308329  T
Q  206 ttgcagttcttaaacaagtg 225  Q
    || || ||||||||||||||    
T  7308330 ttacaattcttaaacaagtg 7308349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 462
Target Start/End: Complemental strand, 21833402 - 21833304
Alignment:
Q  364 gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 462  Q
    |||||||||| |||| |||||||||||  | ||||| |||| |||| || |||||| |  | | ||||||||||||||||| ||||| ||||| |||||    
T  21833402 gagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaagtagtaat 21833304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 2373598 - 2373565
Alignment:
Q  365 agttcttcgagcaaagggaaacattcagcaatga 398  Q
    ||||||||||||||||||||||| ||||||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatga 2373565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 2621538 - 2621502
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaa 395  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  2621538 aggttgagttcttcgagtaaagggaaacaatcagcaa 2621502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 514063 - 513939
Alignment:
Q  101 tcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttgga 200  Q
    |||| |||||||| |||  ||||||||||||||||| ||||||| |||  ||| |||  ||||||||||| ||| || | ||| |||||||||||||| |    
T  514063 tcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaa 513964  T
Q  201 gaagcttgcagttcttaaacaagtg 225  Q
    ||||||| ||||| || ||||||||    
T  513963 gaagcttacagtttttgaacaagtg 513939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 51763779 - 51763672
Alignment:
Q  106 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagc 205  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||   |  ||||| ||||||||   |||||| ||||||||||| || ||||||||||||    
T  51763779 aaaggataaagacgtcaatgttggtctttcacggagagcagaagtgactcctgcattggttatttgatcacagtcaaacatgatgacatcttggagaagc 51763680  T
Q  206 ttgcagtt 213  Q
    || |||||    
T  51763679 ttacagtt 51763672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 1657474 - 1657556
Alignment:
Q  380 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 462  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| |||||||||||| ||||    
T  1657474 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaagttttaat 1657556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 51763529 - 51763487
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagta 401  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||    
T  51763529 aggtcgagttcttcgagcaatgggaaacattccgcaatgagta 51763487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 32151900 - 32151997
Alignment:
Q  365 agttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 462  Q
    ||||||||||||||||||||||| || |||||||| ||||||||  ||| ||||| |||||  ||    ||||||||||| ||||| |||||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttgtaat 32151997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 18315014 - 18314854
Alignment:
Q  109 ggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagcttg 208  Q
    ||||||||||||||| |||||||||||| |||||||  ||  ||| || || ||||||||   || ||| | ||| |||||   ||||| |||||||||     
T  18315014 ggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaagctta 18314915  T
Q  209 cagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaa 269  Q
    |||||||| |||||||| | ||| |||   ||||||||||||||||| |||| || |||||    
T  18314914 cagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaa 18314854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 18314768 - 18314728
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgag 399  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgag 18314728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 28673571 - 28673460
Alignment:
Q  188 ataacctcttggagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaa 287  Q
    |||||||||| ||||||||| ||||| || | ||| || | |||||||  |||||||||||||| ||| | ||||||||||| | ||  ||||||| |||    
T  28673571 ataacctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaa 28673472  T
Q  288 gtgccaatgaaa 299  Q
    ||| ||||||||    
T  28673471 gtggcaatgaaa 28673460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  362 ttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcat 410  Q
    |||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 28695821 - 28695710
Alignment:
Q  188 ataacctcttggagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaa 287  Q
    |||||||||| ||||||||||||||| || | |||||| | ||||| |  | |||||||||||| |||   ||||||||||| | ||  ||||||| |||    
T  28695821 ataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaa 28695722  T
Q  288 gtgccaatgaaa 299  Q
    ||| ||||||||    
T  28695721 gtggcaatgaaa 28695710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 32268513 - 32268564
Alignment:
Q  411 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 462  Q
    ||||||||||| | | |||||||||||||||||| ||||| |||||||||||    
T  32268513 tgctattgatatattgcattttggaacaagtgagagaggtcaaagttgtaat 32268564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 41900572 - 41900512
Alignment:
Q  411 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattgttgga 471  Q
    ||||||||||| ||| ||||| | |||||||||| ||||| ||||||||||| || |||||    
T  41900572 tgctattgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttgga 41900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 7977799 - 7977905
Alignment:
Q  359 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 458  Q
    |||| ||||||||| |||||||||||||| || || ||||| |||| ||  ||| |||| ||||| || || || |||||  |||||||||| |||||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttg 7977898  T
Q  459 taatatt 465  Q
     ||||||    
T  7977899 caatatt 7977905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University