View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_14 (Length: 451)
Name: NF1266_low_14
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 1379861 - 1380250
Alignment:
| Q |
30 |
tgtcccgcctctaaatccgattctctactctccctctccggtgacggcgtcaagattctaattgacgacttcgccggagatgtcacttcctccgatgagc |
129 |
Q |
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| T |
1379861 |
tgtcccgccgctaaatccgattctctactctccctctccggtgacggcgtcaagattctaattgacgacttcgccggagatgtcacttcctccgatgagc |
1379960 |
T |
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| Q |
130 |
gtatcgttgttattatctccgccgcggccgaggaatccgctgcacagcttgctttgattagggtttttgagagaatagtggagaaagataataatgagga |
229 |
Q |
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| T |
1379961 |
gtatcgttgttattatctccgccgcggccgaggaatccgctgcacagcttgctttgattagggtttttgagagaatagtggagaaagataataatgagga |
1380060 |
T |
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| Q |
230 |
gaataataagaaatcgaattcttcggttgggtgtagattgttagctcctagttatcaggttgggtgtgtgcttggtagaggtggtaagattgttgaaaag |
329 |
Q |
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| T |
1380061 |
gaataataagaaatcgaattcttcggttgggtgtagattgttagctcctagttatcaggttgggtgtgtgcttggtagaggtggtaagattgttgaaaag |
1380160 |
T |
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| Q |
330 |
attaggcaagaaagtggtgctcaggttaggattttgcctaaagatcattctcctattcctcctcctggtgatgagttcattcaggtatta |
419 |
Q |
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| T |
1380161 |
attaggcaagaaagtggtgctcaggttaggattttgcctaaagatcattctcctattcctcctcctggtgatgagttcattcaggtatta |
1380250 |
T |
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