View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266_low_15 (Length: 427)

Name: NF1266_low_15
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266_low_15
NF1266_low_15
[»] chr6 (4 HSPs)
chr6 (13-72)||(1179349-1179408)
chr6 (167-211)||(1179466-1179510)
chr6 (278-353)||(10117947-10118025)
chr6 (312-359)||(34556470-34556517)
[»] scaffold0223 (1 HSPs)
scaffold0223 (278-353)||(28180-28257)
[»] scaffold0039 (1 HSPs)
scaffold0039 (278-359)||(53475-53558)
[»] chr7 (1 HSPs)
chr7 (278-346)||(38444478-38444548)
[»] chr2 (2 HSPs)
chr2 (278-346)||(8778326-8778396)
chr2 (315-353)||(29048065-29048103)
[»] chr8 (1 HSPs)
chr8 (320-353)||(7428563-7428596)
[»] chr5 (2 HSPs)
chr5 (326-359)||(25908566-25908599)
chr5 (320-348)||(30004495-30004523)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 1179349 - 1179408
Alignment:
Q  13 aatattctgagatcacttactgctcatatgctaccctcttttttaaaagtaacttatcaa 72  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1179349 aatattctgagaacacctactgctcttatgctaccctcttttttaaaagtaacttatcaa 1179408  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 1179466 - 1179510
Alignment:
Q  167 actgcttgcatttgctacttctagcctattaaagcaatggaatta 211  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  1179466 actgcttgcattttctacttctagcctattaatgcaatggaatta 1179510  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 10117947 - 10118025
Alignment:
Q  278 ttttagtccctgtgaaattttccgtcaatatttt---gtccttggaaaaaatttcatcagcatttttagtccttgtaaa 353  Q
    ||||||||| ||| |||||||||||||| |||||   |||| || |||||| |||||||||||||||| ||||||||||    
T  10117947 ttttagtccttgtaaaattttccgtcaacatttttttgtccctgtaaaaaaattcatcagcatttttaatccttgtaaa 10118025  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 34556470 - 34556517
Alignment:
Q  312 gtccttggaaaaaatttcatcagcatttttagtccttgtaaataattt 359  Q
    ||||||| ||||||||||||||||||||||||||| | |||| |||||    
T  34556470 gtccttgtaaaaaatttcatcagcatttttagtccctataaaaaattt 34556517  T

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Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 28180 - 28257
Alignment:
Q  278 ttttagtccctgtgaaattttccgtcaatatttt--gtccttggaaaaaatttcatcagcatttttagtccttgtaaa 353  Q
    ||||||||||||| |||||||||||||  |||||  ||||||  ||||| ||||||||||||||||| ||||||||||    
T  28180 ttttagtccctgtaaaattttccgtcatcatttttagtccttataaaaattttcatcagcatttttaatccttgtaaa 28257  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 53558 - 53475
Alignment:
Q  278 ttttagtccctgtgaaattttccgtcaatatttt--gtccttggaaaaaatttcatcagcatttttagtccttgtaaataattt 359  Q
    |||||| |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||| ||||||| ||| |||||| |||||    
T  53558 ttttagcccctataaaagtttccgtcaatatttttagtccttgtaaaaaatttcatcagaatttttattccctgtaaaaaattt 53475  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 38444478 - 38444548
Alignment:
Q  278 ttttagtccctgtgaaattttccgtcaatatttt--gtccttggaaaaaatttcatcagcatttttagtcc 346  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||  ||||| |||||| ||||||||||||||    
T  38444478 ttttagtccctgtaaaattttccatcaatatttttagtccttataaaaattttcataagcatttttagtcc 38444548  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 8778326 - 8778396
Alignment:
Q  278 ttttagtccctgtgaaattttccgtcaatatttt--gtccttggaaaaaatttcatcagcatttttagtcc 346  Q
    ||||||||||||| |||| ||||||||| |||||  ||||||| |||||||  ||||||||||||||||||    
T  8778326 ttttagtccctgtaaaatattccgtcaacatttttagtccttgtaaaaaatagcatcagcatttttagtcc 8778396  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 29048103 - 29048065
Alignment:
Q  315 cttggaaaaaatttcatcagcatttttagtccttgtaaa 353  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  29048103 cttgtaaaaaatttcatcagcatttttagtcattgtaaa 29048065  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 7428563 - 7428596
Alignment:
Q  320 aaaaaatttcatcagcatttttagtccttgtaaa 353  Q
    ||||||||||||||||||||||||||||||||||    
T  7428563 aaaaaatttcatcagcatttttagtccttgtaaa 7428596  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 25908566 - 25908599
Alignment:
Q  326 tttcatcagcatttttagtccttgtaaataattt 359  Q
    |||||||||||||||||||||||||||| |||||    
T  25908566 tttcatcagcatttttagtccttgtaaaaaattt 25908599  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 30004523 - 30004495
Alignment:
Q  320 aaaaaatttcatcagcatttttagtcctt 348  Q
    |||||||||||||||||||||||||||||    
T  30004523 aaaaaatttcatcagcatttttagtcctt 30004495  T

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