View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_17 (Length: 424)
Name: NF1266_low_17
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_17 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 4652316 - 4652733
Alignment:
| Q |
17 |
aacaatattgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtac |
111 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
4652316 |
aacaatattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtac |
4652415 |
T |
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| Q |
112 |
aattcaaaacaat-----gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatcctt |
206 |
Q |
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| T |
4652416 |
aattcaaaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatcctt |
4652515 |
T |
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| Q |
207 |
ggaaaacttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcga |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4652516 |
ggaaaacttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatcttttcgaagaaatcga |
4652615 |
T |
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| Q |
307 |
agatctccatgttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatctt |
406 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |
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| T |
4652616 |
agatctccatgttttacgtttttctcaagctccataacacgcattatttgtttgaccgaaagatcagcttcttttaatagcaatattcgcttcccgtctt |
4652715 |
T |
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| Q |
407 |
ccttagaaattttgcggt |
424 |
Q |
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| T |
4652716 |
ccttagaaattttgcggt |
4652733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 16149727 - 16150133
Alignment:
| Q |
23 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattca |
117 |
Q |
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| T |
16149727 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtacaattca |
16149826 |
T |
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| Q |
118 |
aaacaatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttac |
217 |
Q |
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| T |
16149827 |
aaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataacttac |
16149926 |
T |
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| Q |
218 |
aaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatctccatg |
317 |
Q |
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| T |
16149927 |
aaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctttctcaagaaatcgaagatctccatg |
16150026 |
T |
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| Q |
318 |
ttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaatt |
417 |
Q |
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| T |
16150027 |
ttttacatttttctcaagctccataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatatccgcttctcttcttccttagaaatt |
16150126 |
T |
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| Q |
418 |
ttgcggt |
424 |
Q |
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| T |
16150127 |
ttgcggt |
16150133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 23302271 - 23302178
Alignment:
| Q |
331 |
tcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaattttgcggt |
424 |
Q |
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| T |
23302271 |
tcaagctccataacacgcattatttgcttgactgaaagatctgcttcttttaatagcaatatccgcttctcttcttccttagaaattttgcggt |
23302178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 23302332 - 23302273
Alignment:
| Q |
23 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagt |
82 |
Q |
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| T |
23302332 |
attgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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