View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_19 (Length: 394)
Name: NF1266_low_19
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 9425135 - 9424967
Alignment:
| Q |
164 |
tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggtcagtgatgataagtgacacggacactgtaattttgttgaaact |
263 |
Q |
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| T |
9425135 |
tgtcttaattctttgatttcaaggatattttattttcataaatataatttgattggttggtgatgataagtgacaccgacattgtaattttgttgaaact |
9425036 |
T |
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| Q |
264 |
ctaaagattgacttcttctgaatcactgtgacacaaagtgatttagctagaatcatcataaattaataa |
332 |
Q |
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| T |
9425035 |
ctaaagattgacttgttctgaatcacggtgacacatagtgattcagctagaatcatcataaattaataa |
9424967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 9425303 - 9425232
Alignment:
| Q |
93 |
acttcttacagaaatttaacatgaaaatttttgattggagtattctattaaatcataaaattgctaggtgct |
164 |
Q |
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| T |
9425303 |
acttcttaaagaaatttaacatgaaattttttgattggagtattctattaaatcataaaattgctaggtgct |
9425232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 9424607 - 9424568
Alignment:
| Q |
324 |
aattaataaattatagtgatttctagtatataaccagttc |
363 |
Q |
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| T |
9424607 |
aattaataaattatagtgatttctagtatataatcagttc |
9424568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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