View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_29 (Length: 340)
Name: NF1266_low_29
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 23862747 - 23862543
Alignment:
| Q |
30 |
cctatagtatttcacttctcctatataagttgtattatcactttgatcgcacttaatgagaatcgattcatttatttgttctttcataataaaagtgaaa |
129 |
Q |
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| T |
23862747 |
cctatagtatttcacctctcctatataagttgtactatcactttgatcgcacttaatgagaattgattcatttatttgttctttcataataaaagtgaaa |
23862648 |
T |
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| Q |
130 |
gactattatgtcttggtgtaggtttttaatatgtgcttaatttatgcaaatnnnnnnnnttatatctgtttacaatcatttctaatttattctttgttgg |
229 |
Q |
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| T |
23862647 |
gactattatgtcttggtgtaggtttttaatatgtgcttaatttatgcaaataaaaaaaaggatatctgtttataatcatttctaatttattctttgttgg |
23862548 |
T |
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| Q |
230 |
gggcc |
234 |
Q |
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||||| |
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| T |
23862547 |
gggcc |
23862543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 23862498 - 23862447
Alignment:
| Q |
281 |
ctagtagtattaagtatgttcatatattccttcaaacgagtatgttcatctc |
332 |
Q |
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| T |
23862498 |
ctagtagtattaagtatgttcatatattccttcaaaagagtatgttcatctc |
23862447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 18474005 - 18474094
Alignment:
| Q |
31 |
ctatagtatttcacttctcctatataagttgtattatcactttgatcgcacttaatgagaatcgattcatttatttgttctttcataata |
120 |
Q |
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| T |
18474005 |
ctatagtatttcagatgtgctatataagttgttccaacactttgatcacacttaattagaatcatttcattcatttgttccttcataata |
18474094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 35268072 - 35267981
Alignment:
| Q |
30 |
cctatagtatttcacttctcctatataagttgtattatcactttgatcgcacttaatgagaatcgattcatttatttgttctttcataataa |
121 |
Q |
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||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
35268072 |
cctattgtatttcacttctcctatataagctgtactatcactttgatcacacttaatgagaattgattcattcatttgttccatcataataa |
35267981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 35571669 - 35571576
Alignment:
| Q |
30 |
cctatagtatttcacttctcctatataagttgtattatcactttgatcgcacttaatgagaatcgattcatt-tatttgttctttcataataaa |
122 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
35571669 |
cctatagtatttcacctctcctatataagttgtactatcactttgatcacatttaatgagaattgattcattccatttgttccttcataataaa |
35571576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 9801472 - 9801384
Alignment:
| Q |
31 |
ctatagtatttcacttctcctatataagttgtattatcactttgatcgcacttaatgagaatcgattcatttatttgttctttcataata |
120 |
Q |
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||||||||||||| | |||||||||||||||| | |||||||||| |||||||||||||| ||||||| |||||||||||||||||| |
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| T |
9801472 |
ctatagtatttcagctttcctatataagttgtaacaacactttgatcacacttaatgagaat-aattcattcatttgttctttcataata |
9801384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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