View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_3 (Length: 628)
Name: NF1266_low_3
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 281 - 585
Target Start/End: Original strand, 50338055 - 50338359
Alignment:
| Q |
281 |
cctatcagtttcctttttattttatctagtttgaatgtctgaagaagctttgattgtgcagagagactgctaggatgctggcagatgagttcctgaagcg |
380 |
Q |
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| T |
50338055 |
cctatcagtttcctttttattttatctagtttgaatgtctgaagaagctttgattgtgcagagagactgctaggatgctggcagatgagttcctgaagcg |
50338154 |
T |
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| Q |
381 |
cgtagtaatagtggatacatccaatgaaattggaggtgacggagatgttcctcatgcaggcataggcagggcgaggaggatgcaagttccaaatgtgaat |
480 |
Q |
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| T |
50338155 |
cgtagtaatagtggatacatccaatgaaattggaggtgacggagatgttcctcatgcaggcataggcagggcgaggaggatgcaagttccaaatgttaat |
50338254 |
T |
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| Q |
481 |
atgcagcatagtgttagtactaatctcagtcatttggcttaattgactgcttcatctttatgaaaattgttttgataatttgcaatctaatcttctgtgg |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
50338255 |
atgcagcatagtgttagtactaatctcagtcatttggcttaattgactgcttcatctttatgaaaattgttttgataatttgtaatctaagcttctgtgg |
50338354 |
T |
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| Q |
581 |
tgctg |
585 |
Q |
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||||| |
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| T |
50338355 |
tgctg |
50338359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 50337775 - 50337990
Alignment:
| Q |
1 |
tcagaggcaaattattggccttacttgtcgtgttggtcgagcggtgagtggcagtgctaaaattatacatgatctggttgagggaggaggttctatattg |
100 |
Q |
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| T |
50337775 |
tcagatgcaaattattggccttacttgtcgtgttggtcgagcggtgagtggcagtgctaaaattatacatgatctggttgagggaggaggttctatattg |
50337874 |
T |
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| Q |
101 |
gtcattggacctcctggtgttggtaaaactaccttaatcaggtcaacattttaattttgctttttactatgtctgtatgtggaactggtttactatgcaa |
200 |
Q |
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| T |
50337875 |
gtcattggacctcctggtgttggtaaaactaccttaatcaggtcaacattttaattttgctttttactatgtctgtatgtggaactggtttactatgcaa |
50337974 |
T |
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| Q |
201 |
ctgattttcgctttca |
216 |
Q |
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| T |
50337975 |
ctgattttcgctttca |
50337990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 281 - 521
Target Start/End: Complemental strand, 55030063 - 55029844
Alignment:
| Q |
281 |
cctatcagtttcctttttattttatctagtttgaatgtctgaagaagctttgattgtgcagagagactgctaggatgctggcagatgagttcctgaagcg |
380 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||| ||||| |||||||||||||| ||||| |
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| T |
55030063 |
cctatcagtttcctttttattttatatagtttgaatgtctgaagaagctttgattgggcacag-gactgcttggatgttggcagatgagttcatgaag-- |
55029967 |
T |
|
| Q |
381 |
cgtagtaatagtggatacatccaatgaaattggaggtgacggagatgttcctcatgcaggcataggcagggcgaggaggatgcaagttccaaatgtgaat |
480 |
Q |
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||||||||||||||||||||||| ||||||||| || ||||||||| |||| ||| ||||||||||||||||||||||||||| |
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| T |
55029966 |
---------------tacatccaatgaaattggaggtg---gagatgttcttcttgcaggcattggcaaggcaaggaggatgcaagttccaaatgtgaat |
55029885 |
T |
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| Q |
481 |
atgcagcatagtgttagtactaatctcagtcatttggctta |
521 |
Q |
| |
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||||||||| |||| |||||||||||| |||||||||||| |
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| T |
55029884 |
atgcagcattatgttggtactaatctcactcatttggctta |
55029844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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