View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_30 (Length: 335)
Name: NF1266_low_30
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 40120631 - 40120944
Alignment:
| Q |
8 |
gagagaaaacaacaaaatcattgatttgatcaactttgtagaaaaacggaaagaagtaatgggtaattagagaaaaatgtattggtcaccaagtagtttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40120631 |
gagagaaaacaacaaaatcattgatttgatcaactttgtagaaaaacggaaagaagtaatgggtaattagagaaaaatgtattggtcaccaagtagtttt |
40120730 |
T |
|
| Q |
108 |
aagttaccatagaaggctctaatttgtggatttgaagtgactcgcgtttggggatagatagatccatgattttgagattcaattttgtagttaatcaaac |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40120731 |
aagttaccatagaaggctctgatttgtggatttgaagtgactcgggtttggggatagatagatccatgattttgagattcaattttgtagttaatcaaac |
40120830 |
T |
|
| Q |
208 |
ataagaattgctttaaatcacattttaggattagaattgcatgcatactattttcgtctcaacacaatggtaatgtgactttaaaaccttcctcattcga |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40120831 |
ataagaattggtttaaatcacattttaggattagaattgcatgcatactattttcgtctcaacacaatggtaatgtgactttaaaaccttcctcatttga |
40120930 |
T |
|
| Q |
308 |
atttcacatgtttt |
321 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
40120931 |
atttcatatgtttt |
40120944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University