View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266_low_32 (Length: 322)

Name: NF1266_low_32
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266_low_32
NF1266_low_32
[»] chr2 (1 HSPs)
chr2 (52-290)||(8323551-8323789)
[»] chr6 (2 HSPs)
chr6 (100-290)||(21729846-21730036)
chr6 (100-290)||(14453415-14453609)
[»] chr3 (3 HSPs)
chr3 (100-288)||(51140187-51140378)
chr3 (218-288)||(40927394-40927464)
chr3 (244-290)||(38475631-38475677)
[»] chr1 (4 HSPs)
chr1 (100-202)||(14648491-14648593)
chr1 (204-282)||(14650973-14651051)
chr1 (204-282)||(14660764-14660842)
chr1 (246-290)||(27643384-27643428)
[»] chr5 (1 HSPs)
chr5 (100-290)||(14274826-14275019)
[»] chr7 (2 HSPs)
chr7 (241-289)||(34762704-34762752)
chr7 (241-289)||(34764095-34764143)
[»] chr4 (2 HSPs)
chr4 (218-290)||(5185495-5185567)
chr4 (246-290)||(38761399-38761443)
[»] scaffold0839 (1 HSPs)
scaffold0839 (241-289)||(4651-4699)
[»] scaffold0010 (1 HSPs)
scaffold0010 (241-289)||(236671-236719)
[»] chr8 (1 HSPs)
chr8 (246-290)||(16484169-16484213)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 52 - 290
Target Start/End: Complemental strand, 8323789 - 8323551
Alignment:
Q  52 atgtcattaatatgggtggtataaatggacttctctcaatatatttagacaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  8323789 atgtcattaatatgggtggtataaatggacttctctcaatatatttaaacaatgttatgtttgaaacagagagcaagttgcttgcagatgccataaattc 8323690  T
Q  152 ttcttcacctttacacaacgagcttggggacctgctagttcattgtaggggtctcttggttactttcgactttatagtatcgttcatttggagacaagca 251  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||    
T  8323689 ttcttcacctttacacaacgagcttggggacctgctagttcagtgtaggggtctcttggttactttcgactttgtagtatcgttcattcgaagacaaaca 8323590  T
Q  252 aataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  8323589 aataaagttgcacatagcataactagagcatccttatct 8323551  T

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Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 21730036 - 21729846
Alignment:
Q  100 acaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactcttcttcacctttacacaacgagcttggggacctgctagttcattgtag 199  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  21730036 acaatgttatgtttgaaacagacaacaagtcacttgcagatgccataaactattcttcacctttacacaacgagcttggggacctgctagttcagagtag 21729937  T
Q  200 gggtctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||| ||||||  ||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||||||||||||| | |||||||||||    
T  21729936 gggcctcttgtctactttcgactttgtagtgtcgttcattcggaggcaaccaaataaggttgcacatagcatagctacaacatccttatct 21729846  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 14453609 - 14453415
Alignment:
Q  100 acaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactcttcttcacctttacacaacgagcttggggacctgctagttcattgtag 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||||    
T  14453609 acaatgttatgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcactcttccacaacgagcttggggacctgctagttcagtgtag 14453510  T
Q  200 gggtctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcac----atagcatagctagagcatccttatct 290  Q
    ||  ||||||| ||||||||||||| |||| | ||||||| |||| |||||||||||||||||||    |||| |||||||||||||||||||||    
T  14453509 ggccctcttggctactttcgactttgtagtgttgttcattcggaggcaagcaaataaggttgcacatatatagtatagctagagcatccttatct 14453415  T

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Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 288
Target Start/End: Complemental strand, 51140378 - 51140187
Alignment:
Q  100 acaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactcttcttcacctttacacaacgagcttggggacctgctagttcattgtag 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | || ||||| ||||| ||||||||||||||||| |||||    
T  51140378 acaatgttatgtttgaaactgacagcaagttgcttgcagatgccataatttcttcttcatccttccacaatgagctcggggacctgctagttcagtgtag 51140279  T
Q  200 gggtctcttggttac---tttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttat 288  Q
    ||||||||||| |||    |||||||||||||| ||||| ||| |||  ||||| |||| ||||||||||||||||||||||||||||||||    
T  51140278 gggtctcttggctaccaacttcgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttat 51140187  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 40927464 - 40927394
Alignment:
Q  218 cgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttat 288  Q
    ||||||| |||| ||||| ||| | || |||||||||| ||||||| |||||||| |||||||||||||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttat 40927394  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 38475631 - 38475677
Alignment:
Q  244 gacaagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||||| ||||||| ||||||||||| ||| |||||||||||||||||    
T  38475631 gacaaacaaataaagttgcacatagtataactagagcatccttatct 38475677  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 14648491 - 14648593
Alignment:
Q  100 acaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactcttcttcacctttacacaacgagcttggggacctgctagttcattgtag 199  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  14648491 acaatgttctgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcacccttccacaacgagcttggggacctgctagttcagtgtag 14648590  T
Q  200 ggg 202  Q
    |||    
T  14648591 ggg 14648593  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 14650973 - 14651051
Alignment:
Q  204 ctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcat 282  Q
    ||||||| ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14650973 ctcttggctactttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat 14651051  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 14660764 - 14660842
Alignment:
Q  204 ctcttggttactttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcat 282  Q
    ||||||| ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14660764 ctcttggctactttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat 14660842  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 27643428 - 27643384
Alignment:
Q  246 caagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  27643428 caagctaataaggttgctcatagtattgctagagcatccttatct 27643384  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 14275019 - 14274826
Alignment:
Q  100 acaatgttatgtttgaaacagacagcaagttgcttgcagatgccataaactcttcttcacctttacacaacgagcttggggacctgctagttcattgtag 199  Q
    ||||||||||||||||||  |||| ||||| ||||||||| ||||||| |||||||||| |  | ||||| ||||| |||| |||| ||| ||| |||||    
T  14275019 acaatgttatgtttgaaaaggacaacaagtcgcttgcagaagccataagctcttcttcaacaatccacaatgagctcgggggcctgatagctcagtgtag 14274920  T
Q  200 gggtctcttggttac---tttcgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    |||||||||||  ||   |||||||||| |||| ||||||||| | |  ||||||||||  ||||||||||| |||| ||||||||||||||||    
T  14274919 gggtctcttggcaaccaatttcgactttgtagtgtcgttcattcgaaagcaagcaaatagagttgcacataggatagttagagcatccttatct 14274826  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 34762752 - 34762704
Alignment:
Q  241 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 289  Q
    ||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  34762752 ggagacaagcaaataaggtagctcataacatagctagagcttccttatc 34762704  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 34764095 - 34764143
Alignment:
Q  241 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 289  Q
    |||| |||||||||||||| || |||| |||||||||||| ||||||||    
T  34764095 ggagtcaagcaaataaggtagctcataacatagctagagcttccttatc 34764143  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 5185567 - 5185495
Alignment:
Q  218 cgactttatagtatcgttcatttggagacaagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    |||||||| ||| ||||  ||| |||||||||| |||| |||||| ||||| ||||||||||| |||||||||    
T  5185567 cgactttaaagtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatct 5185495  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 38761443 - 38761399
Alignment:
Q  246 caagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  38761443 caagctaataaggttgctcatagtattgctagagcatccttatct 38761399  T

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Target: scaffold0839 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 4699 - 4651
Alignment:
Q  241 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 289  Q
    ||||||||||||||||| | || |||| |||||||||||| ||||||||    
T  4699 ggagacaagcaaataagttagctcataacatagctagagcttccttatc 4651  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 236719 - 236671
Alignment:
Q  241 ggagacaagcaaataaggttgcacatagcatagctagagcatccttatc 289  Q
    |||| |||||||||||||| || |||| |||||||||||| ||||||||    
T  236719 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 236671  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 16484213 - 16484169
Alignment:
Q  246 caagcaaataaggttgcacatagcatagctagagcatccttatct 290  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||    
T  16484213 caagctaataaggttgctcatagtattgctagagcatccttatct 16484169  T

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