View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_33 (Length: 322)
Name: NF1266_low_33
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_33 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 100 - 322
Target Start/End: Complemental strand, 34624434 - 34624212
Alignment:
| Q |
100 |
aagttgtactgtaattttatttttt-catcaaatagtcatgtcatttaattactatagcattgttacatagacatgactatttgattgcttacttgtcta |
198 |
Q |
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| T |
34624434 |
aagttgtactgtaattttttttttttcatcaaatagtcatgtcatt-aattactatagcattgttacatagacatgactatttgattgcttacttgtcta |
34624336 |
T |
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| Q |
199 |
atctttgaaaagggtgattgtgttgttgatcattgataatttgaatgtatgtagtagagtcattgttggctttccttttgtagaaagatggttaaattgt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34624335 |
atctttgaaaagggtgattgtgttgttgatcattgataatttgaatgtatgtagtagagtcattgttggctttccttttgtagaaagatggttaaattgt |
34624236 |
T |
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| Q |
299 |
gtatcttctttaatggtttaagtt |
322 |
Q |
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| T |
34624235 |
gtatcttctttaatggtttaagtt |
34624212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 419259 - 419323
Alignment:
| Q |
258 |
tcattgttggctttccttttgtagaaagatggttaaattgtgtatcttctttaatggtttaagtt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
419259 |
tcattgttggctttccttttgtagaaagatggttaaattgtgcatcttctttaatggtttaagtt |
419323 |
T |
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