View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_36 (Length: 320)
Name: NF1266_low_36
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 44 - 309
Target Start/End: Complemental strand, 50647658 - 50647393
Alignment:
| Q |
44 |
atatagattttcgtatagattaagtttttggtgcataagtgagacaggttctgcttcatgcataaacttgtgttccaccattggattgataagtcttgca |
143 |
Q |
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| T |
50647658 |
atatagattttcgtatagattaagtttttggtgcataagtgagacaagttttgcttcatgcataaacttgtgttccaccattggattgataagtcttgca |
50647559 |
T |
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| Q |
144 |
attgaatcaaatgtgatataatgtgacttgttgatccaatggttgaaaacaaagttgtgtatgatgtaaaactaatttaccggtgtgcattaagggttat |
243 |
Q |
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| T |
50647558 |
attgaatcaaatgtgatataatgtgacctgttgatccaatggttgaaaacaaagttgtgtatgatgtaaaactaatttaccggtgtgcattaagggttat |
50647459 |
T |
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| Q |
244 |
gatattgttccaagagtattgattggtgtgttataaccttctccattttacgtttactctagaatt |
309 |
Q |
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| T |
50647458 |
gatattgttccaagagtattgattggtgtgttatagccttctccattttacgtttactctagaatt |
50647393 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 34253117 - 34253038
Alignment:
| Q |
116 |
ttccaccattggattgataagtcttgcaattgaatcaaatgtgatataatgtgacttgttgatccaatggttgaaaacaa |
195 |
Q |
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| T |
34253117 |
ttccaccattggatcaataagtcttgccattggatcaaatgtgatatgttgtgacttattgacctaatgctagaaaacaa |
34253038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 39611720 - 39611646
Alignment:
| Q |
149 |
atcaaatgtgatataatgtgacttgttgatccaatggttgaaaacaaagttgtgtatgatgtaaaactaatttac |
223 |
Q |
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| T |
39611720 |
atcaaatgtgatatagtgtgacttattgatctaatggtagaaaagaaaattgtatatggtggaagactaatttac |
39611646 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 52416406 - 52416492
Alignment:
| Q |
116 |
ttccaccattggattgataagtcttgcaattgaatcaaatgtgatataatgtgacttgttgatccaatggttgaaaacaaagttgtg |
202 |
Q |
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| T |
52416406 |
ttccaccattggatcaataagtcgtacccttggatcaattgtgatttgatgtgacttgttgattcaacggtagaaaacaaacttgtg |
52416492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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