View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_4 (Length: 619)
Name: NF1266_low_4
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 81 - 566
Target Start/End: Original strand, 26304267 - 26304752
Alignment:
| Q |
81 |
acagctgcatatgcaatttaaagccataattctaagctcatttaagataaaatttctcacctggctccattatgttcattttgatcatgataattccaag |
180 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26304267 |
acagctgcatacgcaatttaaagccataattctaagctcatttacgataaaatttctcacctggctccattatgttcattttgatcatgataattccaag |
26304366 |
T |
|
| Q |
181 |
gagtcccaaagcacctagctgatcctcctagcttgtctcctttacaaatctcagcccttttttctggcatattaataagctccttagaggcagttttctg |
280 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||| |
|
|
| T |
26304367 |
gagtcccaaaacacctagctgatcctcctagtttgtctcctttacaaatctcagcccttttttctggcatattagtaagctccttcggggcaattttctt |
26304466 |
T |
|
| Q |
281 |
agcagagttcatagagacaaaagcagcatcatttgttgcaacagttccacaaccaatccaatttctgaacacactagtcactctaacagaattgcttcta |
380 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26304467 |
agcagggttcatagagacaaaagcagcatcatttgttgcaacagttccacaaccaatccaatttctgaacacactagtcactctaacagaattgcttcta |
26304566 |
T |
|
| Q |
381 |
atcttagtaaacgaggattgagattgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgttattttgac |
480 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26304567 |
atcttagtaaatgaggattgagattgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgttattttgac |
26304666 |
T |
|
| Q |
481 |
catcttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatgattcatctcactc |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
26304667 |
catcttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttgtcatgattcttctcactc |
26304752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 556
Target Start/End: Complemental strand, 12134033 - 12133962
Alignment:
| Q |
485 |
ttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatgatt |
556 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12134033 |
tttttaacccttcttaatcatcaaattgcgatacaaagaaggaaatgagaaagtctcaaacttctcatgatt |
12133962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University