View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_41 (Length: 305)
Name: NF1266_low_41
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_41 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 4652991 - 4652729
Alignment:
| Q |
33 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnttatgatccgtcta |
132 |
Q |
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| T |
4652991 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggattttctgataaaaaaaa--tcatgatccgtcta |
4652894 |
T |
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| Q |
133 |
aagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcaggt |
232 |
Q |
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| T |
4652893 |
aagaacaacgaaatagacaatcttgga--------tgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcagga |
4652802 |
T |
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| Q |
233 |
tattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
305 |
Q |
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| T |
4652801 |
tattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
4652729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 23301909 - 23302182
Alignment:
| Q |
30 |
taaaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnttatgatccgt |
129 |
Q |
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| T |
23301909 |
taaaaaaggtaggtttgttaataaaaatgggataatgcaaaggagagatttgttttgtcaccgaggaggatttcctgataaaaaaat--tcaagatccgt |
23302006 |
T |
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| Q |
130 |
ctaaagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggca |
229 |
Q |
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| T |
23302007 |
ctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttagagatttttccagaagagtggca |
23302106 |
T |
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| Q |
230 |
ggttattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
305 |
Q |
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| T |
23302107 |
ggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
23302182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 16150399 - 16150129
Alignment:
| Q |
33 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnttatgatccgtcta |
132 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| | | |||||||||| |
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| T |
16150399 |
aaaaggtaggtttgttaataaaaatgggataatgcacaggagagatttgttttgtcaccgcggaggatttcctgataaaaaaat--tcaagatccgtcta |
16150302 |
T |
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| Q |
133 |
aagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcaggt |
232 |
Q |
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| T |
16150301 |
aagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttcgagatttttccagaagagtggcaggt |
16150202 |
T |
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| Q |
233 |
tattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
305 |
Q |
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| T |
16150201 |
ttttgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
16150129 |
T |
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