View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_46 (Length: 291)
Name: NF1266_low_46
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 39014110 - 39013991
Alignment:
| Q |
103 |
catcatattcataagtataaacagcatacttcacttctcatcagacattttttggttaattcggctaagaaatattttcttatttcagccgaaagcgtaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39014110 |
catcatattcataagtataaacagcatacttcacttctcatcagacattttttggttaattcggctaagaaatattttcttatttcagccgaaagcgtaa |
39014011 |
T |
|
| Q |
203 |
tgttatttatatgctcatac |
222 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39014010 |
tgttatttatatgctcatac |
39013991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University