View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266_low_48 (Length: 288)

Name: NF1266_low_48
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266_low_48
NF1266_low_48
[»] chr7 (18 HSPs)
chr7 (13-240)||(36957527-36957753)
chr7 (145-243)||(13108242-13108341)
chr7 (147-243)||(5811162-5811259)
chr7 (148-237)||(36346564-36346655)
chr7 (146-237)||(45782657-45782750)
chr7 (147-243)||(46475119-46475217)
chr7 (148-240)||(7699882-7699976)
chr7 (148-240)||(7700080-7700174)
chr7 (148-240)||(7700278-7700372)
chr7 (148-240)||(7700476-7700570)
chr7 (145-237)||(28307491-28307585)
chr7 (146-237)||(26972200-26972293)
chr7 (147-239)||(34828164-34828257)
chr7 (150-240)||(21807324-21807415)
chr7 (146-243)||(42220961-42221059)
chr7 (146-237)||(34108527-34108620)
chr7 (147-222)||(42950035-42950111)
chr7 (145-237)||(29953568-29953662)
[»] chr2 (9 HSPs)
chr2 (147-237)||(37498861-37498953)
chr2 (147-227)||(16089932-16090013)
chr2 (146-227)||(33732680-33732762)
chr2 (151-227)||(3830900-3830977)
chr2 (147-237)||(44958214-44958306)
chr2 (148-243)||(41188864-41188961)
chr2 (147-233)||(6376237-6376324)
chr2 (176-237)||(14573096-14573159)
chr2 (147-237)||(36315662-36315754)
[»] chr1 (6 HSPs)
chr1 (145-237)||(34307134-34307228)
chr1 (150-240)||(39249864-39249956)
chr1 (145-243)||(28647448-28647547)
chr1 (146-227)||(2509135-2509218)
chr1 (150-243)||(19258674-19258768)
chr1 (142-174)||(8848839-8848871)
[»] chr4 (9 HSPs)
chr4 (145-237)||(44275807-44275900)
chr4 (146-237)||(7217866-7217959)
chr4 (148-227)||(21390955-21391035)
chr4 (150-243)||(35545007-35545102)
chr4 (147-240)||(6112728-6112822)
chr4 (148-237)||(49243916-49244006)
chr4 (146-237)||(28093093-28093186)
chr4 (148-237)||(3672375-3672466)
chr4 (148-239)||(52191200-52191292)
[»] chr6 (4 HSPs)
chr6 (149-243)||(14023029-14023124)
chr6 (145-233)||(24208549-24208638)
chr6 (146-227)||(3118044-3118127)
chr6 (147-243)||(3986904-3987001)
[»] chr3 (9 HSPs)
chr3 (148-227)||(21559672-21559753)
chr3 (147-243)||(29472904-29473001)
chr3 (147-237)||(51339782-51339873)
chr3 (147-243)||(39467100-39467197)
chr3 (148-237)||(46111943-46112034)
chr3 (146-237)||(30735493-30735586)
chr3 (146-240)||(48200783-48200879)
chr3 (148-232)||(38231398-38231484)
chr3 (148-219)||(39072278-39072350)
[»] chr8 (11 HSPs)
chr8 (148-240)||(33726110-33726203)
chr8 (146-243)||(18184648-18184746)
chr8 (147-237)||(36189317-36189407)
chr8 (147-243)||(30432434-30432531)
chr8 (147-237)||(12665446-12665538)
chr8 (149-242)||(38845023-38845118)
chr8 (156-237)||(44081881-44081964)
chr8 (148-224)||(10203778-10203856)
chr8 (147-237)||(43186128-43186219)
chr8 (147-237)||(31318906-31318998)
chr8 (148-237)||(42162699-42162790)
[»] scaffold0043 (1 HSPs)
scaffold0043 (147-229)||(87161-87244)
[»] chr5 (9 HSPs)
chr5 (146-243)||(31800653-31800751)
chr5 (148-237)||(39371028-39371119)
chr5 (146-227)||(40887939-40888022)
chr5 (151-227)||(27553376-27553453)
chr5 (148-237)||(2237377-2237468)
chr5 (148-237)||(13347229-13347320)
chr5 (147-240)||(42683697-42683792)
chr5 (197-243)||(1815666-1815712)
chr5 (145-237)||(19124469-19124562)
[»] scaffold0062 (1 HSPs)
scaffold0062 (148-237)||(6819-6910)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 36957753 - 36957527
Alignment:
Q  13 catgtcaactagtgttgatattctttcaatgtaaaagaaaactcctcaattagtagacagggcataggaaatctaactccaatcataattgtaaatggtg 112  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36957753 catgtcaaccagtgttgatattctttcaatgtaaaa-aaaactcctcaactagtagacagggcataggaaatctaactccaattataattgtaaatggtg 36957655  T
Q  113 tacaatcctcaagcaagttagatcccaaatacaaaggaaaaagataggtaggcaccattttttatacacctctaatgttcacccatgtgttatgggtatt 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| | || | ||||||||||||  |||||||    
T  36957654 tacaatcctcaagcaagttaggtcccaaatacaaaggaaaaagataggtagacacaattttttatacacctttcatatacacccatgtgttgggggtatt 36957555  T
Q  213 ttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||||||| |||||||    
T  36957554 ttagtaattttacattacattatcatcc 36957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 13108341 - 13108242
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||||| |||| |||||||||||||| | |||| |||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||    
T  13108341 aaaggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccctt 13108242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 5811162 - 5811259
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||| |||| |||||||||||||||  |||| |||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||    
T  5811162 aggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccctt 5811259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 36346564 - 36346655
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||| ||||| |||||||||| |||| |||||  |||||||| |||||||||||||||||||||| | |||||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca 36346655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 45782657 - 45782750
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcac--ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||||| |||| |||||||||||| | | |||| |||  |||||||||| |||||||||||||||||||||| | |||||||    
T  45782657 aaggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatca 45782750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 46475217 - 46475119
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttat-gggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| || | |||||||||| ||||||||||||||||| |||| ||||| ||| |||||    
T  46475217 aggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctt 46475119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 7699882 - 7699976
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||  |||| ||||| |||||||||| || | ||||  ||||||||||||||||||||||||||||| || | ||||||||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcc 7699976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 7700080 - 7700174
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||  |||| ||||| |||||||||| || | ||||  ||||||||||||||||||||||||||||| || | ||||||||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcc 7700174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 7700278 - 7700372
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||  |||| ||||| |||||||||| || | ||||  ||||||||||||||||||||||||||||| || | ||||||||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcc 7700372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 7700476 - 7700570
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||  |||| ||||| |||||||||| || | ||||  ||||||||||||||||||||||||||||| || | ||||||||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcc 7700570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 28307491 - 28307585
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||||| || | ||||| |||||||||| |||| ||  ||||| ||||| |||||||||||||||||||||| | |||||||    
T  28307491 aaaggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatca 28307585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 26972200 - 26972293
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||||| |||| ||||| |||||| ||| |||| ||  ||||||| ||| |||||||| ||||||||||||| | |||||||    
T  26972200 aaggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatca 26972293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 34828257 - 34828164
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatcatc 239  Q
    ||||||||||||||||| || | ||||| ||||||| || |||  ||||| || ||||| |||||||||||||||||||||| | |||||||||    
T  34828257 aggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatc 34828164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 21807324 - 21807415
Alignment:
Q  150 aaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||| | || | |||||||||||| ||| || | ||||| | |||||| ||||||||||||||||| |||| ||||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatcc 21807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 42220961 - 42221059
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggta-ttttagtaattttacattacatcatcatccctt 243  Q
    |||||||||||||||||| |||| ||||| ||||||| || |||| ||| |||||||||| ||||| |||||||||||| |||| | ||||||| |||||    
T  42220961 aaggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctt 42221059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 34108620 - 34108527
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcac--ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||||  |||| ||||| |||||| ||| |||| |||  |||||| ||| |||||||| ||||||||||||| | |||||||    
T  34108620 aaggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatca 34108527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 42950035 - 42950111
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattt 222  Q
    ||||||||||||||||| |||| ||||||||||||||   |||| || ||||||| | | |||||||||||||||||    
T  42950035 aggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 29953568 - 29953662
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttcac--ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||||| |||| ||||| |||||| ||| ||||  ||  |||||| ||| || ||||| ||||||||||||| | |||||||    
T  29953568 aaaggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatca 29953662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 37498861 - 37498953
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| ||  ||||||||||| |||||||||||||||||||||| | |||||||    
T  37498861 aggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatca 37498953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 16090013 - 16089932
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacat 227  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  16090013 aggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacat 16089932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 33732762 - 33732680
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||||||||| |||| ||||| |||||||||| |||| || ||||| | ||| ||||||||||||||||||||||    
T  33732762 aaggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacat 33732680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 3830900 - 3830977
Alignment:
Q  151 aaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacat 227  Q
    ||||||||||||| |||| ||||| |||||||||| |||| || ||||||||||| |||||| |||||||||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacat 3830977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 44958306 - 44958214
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| || | ||||| |||||||||| ||||  ||||  |||||||| |||||||||||||||||||||| | |||||||    
T  44958306 aggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatca 44958214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 41188961 - 41188864
Alignment:
Q  148 ggaaaaagataggtaggcaccatttt-ttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||| || |||| |||| |||||||||||| |||| || | ||||||| |  | ||||||||||||||||||| |||||||||||||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctt 41188864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 6376237 - 6376324
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacatc 233  Q
    ||||||||||||||||| || | |||||||||||||||  |||| || | |||||||||  |||||||||||||||| |||| |||||    
T  6376237 aggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatc 6376324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 14573159 - 14573096
Alignment:
Q  176 atacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||| |||| |||||  |||||||| |||||||||||||||||||||| | |||||||    
T  14573159 atacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatca 14573096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 36315754 - 36315662
Alignment:
Q  147 aggaaaaagataggtaggca-ccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| || || ||||| |||||||||| |||| |||| ||||||| | |||||||||| | |||| |||| |||| ||||    
T  36315754 aggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatca 36315662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 34307134 - 34307228
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttcac--ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||||| |||| ||||| |||||||||| |||| |||  |||||||||| |||||||||||||||||||||| | |||||||    
T  34307134 aaaggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatca 34307228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 39249864 - 39249956
Alignment:
Q  150 aaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||| |||| ||||| |||||||||| |||| |||||  |||| ||| |||||||||||||||||||||||| |||| |||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcc 39249956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 28647547 - 28647448
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||||| |||| ||||||||||| |||| |||| || ||||||||||| |  ||||||| |||||| |||| |||||| || |||||    
T  28647547 aaaggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 28647448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 2509218 - 2509135
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||||||||| |||  ||||| |||||||||| |||| ||||  ||||| ||| || |||||||||||||||||||    
T  2509218 aaggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacat 2509135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 19258674 - 19258768
Alignment:
Q  150 aaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    |||||||||||||| |||| ||||||||||| |||| |||| || ||||||||||| |  ||||||| |||||| |||| |||||| || |||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 19258768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 8848839 - 8848871
Alignment:
Q  142 tacaaaggaaaaagataggtaggcaccattttt 174  Q
    |||||||||||||||||||||| ||||||||||    
T  8848839 tacaaaggaaaaagataggtagacaccattttt 8848871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 44275900 - 44275807
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||| ||| |||| ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||||||| | |||||||    
T  44275900 aaaggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatca 44275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 7217959 - 7217866
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||||  |||| ||||| |||||||||| |||| |||||  ||||||||| ||||||||||||||||||||| | |||||||    
T  7217959 aaggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatca 7217866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 21390955 - 21391035
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||||||| |||| ||||| |||||||| | |||| |||| ||||||||| ||||||||||||||||||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacat 21391035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 35545102 - 35545007
Alignment:
Q  150 aaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggtatttt-agtaattttacattacatcatcatccctt 243  Q
    |||||||||||||| |||| ||||| ||||||| || |||| ||| |||||||||| ||||||||| ||||||||||||| | ||||||| |||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctt 35545007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 6112822 - 6112728
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    ||||||||||||||||| |||  ||||| |||||| ||| |||| ||| |||||| ||| |||||||| ||||||||||||| | ||||||||||    
T  6112822 aggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcc 6112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 49244006 - 49243916
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||| |||| || | ||||| |||||||||| |||| ||| |||||| ||| |||||||||||||||||||||| | |||||||    
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 28093093 - 28093186
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||||| || | ||||| |||||| ||| |||| ||  ||||||| ||| |||||||| |||| |||||||| | |||||||    
T  28093093 aaggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatca 28093186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 3672466 - 3672375
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||  ||| ||||| |||||| ||| |||| ||||  ||||| ||| |||||||| ||||||| ||||| | |||||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatca 3672375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 52191200 - 52191292
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatcatc 239  Q
    |||||||||| |  || |||| ||||||||||||||||  ||| ||||| || ||||| | |||||||||||||||  ||| |||||||||||    
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatc 52191292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 14023124 - 14023029
Alignment:
Q  149 gaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||| |||| |||||||||||||||  |||| |||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcacccctt 14023029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 24208638 - 24208549
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatc 233  Q
    ||||||||||||||||||| || | |||||||||||||||| || | |||| ||||||||| ||||||||||||||||| |||| |||||    
T  24208638 aaaggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatc 24208549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 3118044 - 3118127
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcac--ccatgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||||||||| || | ||||| ||||| |||| |||| |||  |||||| ||| ||||||||||||||||||||||    
T  3118044 aaggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacat 3118127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 3986904 - 3987001
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgt-tcacccatgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||| || ||||||| |||||  | | |||| |  ||||||| ||| |||||||| ||||||||||||| | || ||||||||||    
T  3986904 aggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccctt 3987001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 21559753 - 21559672
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||| ||| |||||||||| |||||||||| |||| |||||  |||||||| ||||||||||||||||||||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacat 21559672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 29473001 - 29472904
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||| || | ||||| ||||||| || |||  ||||| |||||||| |||||||||||||||||||||| | |||||||||||||    
T  29473001 aggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccctt 29472904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 51339782 - 51339873
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| |||  |||||||||  ||||||||||||||||||||| | |||||||    
T  51339782 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatca 51339873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 39467100 - 39467197
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||||  |||| |||||||||||||||  |||| |||| |||||||||||| |||||||||||||| | || ||||| ||| |||||    
T  39467100 aggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccctt 39467197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 46111943 - 46112034
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||||||||| |||||||| | || | ||  ||||||| ||| |||||||||||||||||||||| | |||||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatca 46112034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 30735493 - 30735586
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcac-ccatgtgttatgggta-ttttagtaattttacattacatcatca 237  Q
    |||||||||||||||||| |||| ||||| ||||||| || |||| ||| |||||||||| ||||| |||||||||||| |||| | |||||||    
T  30735493 aaggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca 30735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 48200879 - 48200783
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||||| || | ||||| |||||| | | |||| |||||  |||| |||||||||||| ||||||||||||| | ||||||||||    
T  48200879 aaggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcc 48200783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 38231484 - 38231398
Alignment:
Q  148 ggaaaaagataggtaggca-ccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacat 232  Q
    |||||||||||||||| || || ||||| |||||||||| |||| || ||||||||| | ||||| |||||| |||| |||||||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacat 38231398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 39072278 - 39072350
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaa 219  Q
    |||||||||||||||| |||  ||||||||||| || | |||| || ||||||||| | ||||||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 33726203 - 33726110
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    |||||||||||||||| |||| |||||||||||||||  |||| |||  ||||||||| ||||||||||||||||| |||| ||||| ||||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatcc 33726110  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 18184746 - 18184648
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcacc-catgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    |||||||||||||||||| || | ||||| |||||||| | |||| |||| ||||||||| ||||||||||||||||||| || | ||||||| |||||    
T  18184746 aaggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctt 18184648  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 36189407 - 36189317
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcacccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| |||| ||||| ||||||| || |||| ||||||| ||||| |||||||||| |||||||| || | |||||||    
T  36189407 aggaaaaagataggtagacaccctttttcatacaccacttatgtacacccatatgttaggggtattttaataattttatatcatatcatca 36189317  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 30432531 - 30432434
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||| | ||| |||| ||||| |||||||||| |||| || ||||| | |||||||||||||||||||||||||| | ||||||| |||||    
T  30432531 aggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcacccctt 30432434  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 12665538 - 12665446
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| || | |||||  ||||||||| ||||  ||||  |||||||| |||||||||||||||||||||| | |||||||    
T  12665538 aggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatca 12665446  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 38845023 - 38845118
Alignment:
Q  149 gaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatcatccct 242  Q
    ||||||||||| ||  ||||||||||||||||||  | |||| |||||  |||||||| || ||||||||||||||  ||| ||||||||| ||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccct 38845118  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 44081964 - 44081881
Alignment:
Q  156 ataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||| |||| ||||| |||||| ||| |||| |||||  |||| ||| |||||||| ||||||||||||||| |||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatca 44081881  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 10203856 - 10203778
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaatttta 224  Q
    |||||||||||||||| |||| ||||| ||||| |||| |||| ||||  ||||| ||| || ||||||||||||||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaatttta 10203778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 43186219 - 43186128
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| || ||||||| |||||| ||| |||| ||||| |||| ||| ||| |||| |||||||||| || | |||||||    
T  43186219 aggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatca 43186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 31318998 - 31318906
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||| || ||||||| |||||| ||| || | ||  ||||||| ||| | |||||| ||||||||||||| | |||||||    
T  31318998 aggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatca 31318906  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 42162790 - 42162699
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||  ||||| |||||| | | |||| |||||  |||| ||| |||||||| ||||||||||||| | |||||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatca 42162699  T

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Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 87161 - 87244
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacatta 229  Q
    ||||||||||||||||| |||| ||||| |||||||| | |||| ||||| |||||||| ||||||||||||||||||| ||||    
T  87161 aggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatatta 87244  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 31800751 - 31800653
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    ||||||||||||||| || |||| ||||| ||||||||||  ||| ||||| || ||||| |||||||||||||||||||||| | ||||||| |||||    
T  31800751 aaggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctt 31800653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 39371119 - 39371028
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||| ||||| |||||| ||| |||| ||  ||||||| ||| |||||||| ||||||||||||| | |||||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatca 39371028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 40887939 - 40888022
Alignment:
Q  146 aaggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacat 227  Q
    |||||||||||||||||| |||| ||||| |||||||||| |||| ||  ||||| | |||  |||||||||||||||||||||    
T  40887939 aaggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacat 40888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 27553376 - 27553453
Alignment:
Q  151 aaaagataggtaggcaccattttttatacacctctaatgttcaccc-atgtgttatgggtattttagtaattttacat 227  Q
    |||| |||| ||| |||| ||||| |||||||||| |||| ||||| |||||||| | ||||||||||||||||||||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacat 27553453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 2237468 - 2237377
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttca--cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||| ||||| |||||| ||| |||| ||  |||| || ||| |||||||| ||||||||||||| | |||||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatca 2237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 13347320 - 13347229
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||||||||||||||| |||| ||||| |||||| ||| |||| ||||  ||||| ||| |||||||| ||||||| ||||| | |||||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatca 13347229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 42683792 - 42683697
Alignment:
Q  147 aggaaaaagataggtaggcaccattttttatacacctctaatgttcaccc--atgtgttatgggtattttagtaattttacattacatcatcatcc 240  Q
    ||||||||||||| ||| || | ||||| |||||||||| |||| |||||  || | ||| |||||||||||||||||||||| | |||| |||||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcc 42683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 1815666 - 1815712
Alignment:
Q  197 atgtgttatgggtattttagtaattttacattacatcatcatccctt 243  Q
    |||||||| |||||||||||||||||||||| | ||||||| |||||    
T  1815666 atgtgttaggggtattttagtaattttacatcatatcatcacccctt 1815712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 19124469 - 19124562
Alignment:
Q  145 aaaggaaaaagataggtaggcaccattttttatacacctctaatgttca-cccatgtgttatgggtattttagtaattttacattacatcatca 237  Q
    |||| |||||||||||||| ||||| ||||||||||||||| || | ||   || |||| |  ||||||||||||||||||||| | |||||||    
T  19124469 aaagaaaaaagataggtagacaccaatttttatacacctctcatatacagttcacgtgtcaaaggtattttagtaattttacatcatatcatca 19124562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 6910 - 6819
Alignment:
Q  148 ggaaaaagataggtaggcaccattttttatacacctctaatgttcacc--catgtgttatgggtattttagtaattttacattacatcatca 237  Q
    ||||||||||||||||  ||| ||||| |||||| ||| |||| ||||  ||||| ||| || ||||| ||||||||||||| | |||||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatca 6819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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