View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_5 (Length: 611)
Name: NF1266_low_5
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 75 - 380
Target Start/End: Complemental strand, 32464862 - 32464557
Alignment:
| Q |
75 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactatgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464862 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactacgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
32464763 |
T |
|
| Q |
175 |
ccgagtcaaagtaatcgagattgttaccaacaaatacaggtatacaagataaagaatgtaaatcagccgtaaacccatttaacttctccatctcgcctat |
274 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
32464762 |
ccgagtcaaagtaaccgagattgctgccaacaaataccggtatacaagataaagaatgtaaatcagccataaacccatttaactcctccatctcgcctat |
32464663 |
T |
|
| Q |
275 |
ataaatactggaaaaaactaaatgctaggactatagtcaatacatagcgatgcaaatgacctgatgatttatctttgatcccactcatgcttgaatcgag |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464662 |
ataaatactggaaaaaactaaatgctaggactatagtcaatacatagcgatgcaaatgacctgatgatttatctttgatcccactcatgcttgaatcgag |
32464563 |
T |
|
| Q |
375 |
aattaa |
380 |
Q |
| |
|
| |||| |
|
|
| T |
32464562 |
agttaa |
32464557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 32465855 - 32465782
Alignment:
| Q |
9 |
caacaatatgtgccttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
82 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32465855 |
caacaatatgtgctttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
32465782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 611
Target Start/End: Complemental strand, 32464473 - 32464298
Alignment:
| Q |
447 |
ctcccattttagcctccaccctcatattttaattttgnnnnnnnagaggca--------cagtatgatattatattacttct-ttttagcctccaccctc |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
32464473 |
ctcccattttagcctccaccctcatattttaatattgttttttaagaggcatatagtatcagtatgctattatattactcccattttagcctccaccctc |
32464374 |
T |
|
| Q |
538 |
atattttaattttgnnnnnnnagaggcaca--gtatgatattatattacttctttttagcctccaccctcatattt |
611 |
Q |
| |
|
|||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464373 |
atattttaattttgtttttttagaggcatatagtaggatattatattacttctttttagcctccaccctcatattt |
32464298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 447 - 545
Target Start/End: Complemental strand, 32464396 - 32464296
Alignment:
| Q |
447 |
ctcccattttagcctccaccctcatattttaattttgnnnnnnnagaggcaca--gtatgatattatattacttctttttagcctccaccctcatatttt |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464396 |
ctcccattttagcctccaccctcatattttaattttgtttttttagaggcatatagtaggatattatattacttctttttagcctccaccctcatatttt |
32464297 |
T |
|
| Q |
545 |
a |
545 |
Q |
| |
|
| |
|
|
| T |
32464296 |
a |
32464296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 547
Target Start/End: Complemental strand, 32464491 - 32464441
Alignment:
| Q |
498 |
cagtatgatattatattacttct-ttttagcctccaccctcatattttaat |
547 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
32464491 |
cagtatgctattatattactcccattttagcctccaccctcatattttaat |
32464441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University