View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_50 (Length: 276)
Name: NF1266_low_50
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 10685816 - 10685732
Alignment:
| Q |
39 |
gaagaatattacacttatgaaacaattatatataaccattattttgttttcaaaccgactaactattgttatatgttttgtactc |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10685816 |
gaagaaaattacacttatgaaacaattatatattaccattattttgttttcaaaccaactaactattgttatatgttctgtactc |
10685732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 10685669 - 10685637
Alignment:
| Q |
188 |
gatttttctatattttaaaagtaaagtatagtt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10685669 |
gatttttctatattttaaaagtaaagtatagtt |
10685637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University