View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_low_6 (Length: 573)
Name: NF1266_low_6
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 495
Target Start/End: Original strand, 55878392 - 55878866
Alignment:
| Q |
28 |
tcaataccagacacacaattggcagattggccgcccaccacccacgccg----atatggccaagaaagagttgagagatgagaattaaggtatgcaatgt |
123 |
Q |
| |
|
||||| |||| ||||||| |||||| |||||||| |||||||||| ||| | ||||| |||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
55878392 |
tcaatgccagtcacacaactggcagcttggccgcgcaccacccacaccgcaatacatggctgagaaagagattaaagatgagaattaaggtatgcaatgt |
55878491 |
T |
|
| Q |
124 |
gtctcaaccgatttgctctgctattttaattatacattgatgcaatcttcttaattgatttgttttttctgttttacacttctcattacccactttcaat |
223 |
Q |
| |
|
||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
55878492 |
gtcacaactgatttgatttgctattttaattatacattgatgcaatcttcttaattgatttgttggttctgttttacatttctcattacccactttcaat |
55878591 |
T |
|
| Q |
224 |
gaagaatggatttcaattatgatatattcacaattttgtgaaaaattccgtctttcactagcgtaaatatgttcattgattcattgaaaaccaatttatg |
323 |
Q |
| |
|
||||| | |||||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
55878592 |
gaagactagatttcaattatgatatattggcagttttgtgaaaaattctgtctttcactagcgtacatatgttcattgattcattgaaaacgaatttatg |
55878691 |
T |
|
| Q |
324 |
ttgatgatgcatggaatgtcatagaataaatg---aaacaaaggcattcattttctaattctgattatcttccatttgagtactgctatgacttaaggtg |
420 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
55878692 |
ttgctgatgcatggaatgtcatagaataaatgaaaaaaaaaaggcattcgttttctgattctgatgatcttccctttgagtactgctatgacataaggtt |
55878791 |
T |
|
| Q |
421 |
attatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactgattcttggatat |
495 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
55878792 |
ataatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactaattgttggatat |
55878866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 46623074 - 46622955
Alignment:
| Q |
125 |
tctcaaccgatttgctctgctattttaattatacattgatgcaatcttcttaattgatttgttttttctgttttacacttctcattacccactttcaatg |
224 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||| |||||||||||||||||| ||| ||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
46623074 |
tctcaactgatttgctctgctattttaatcgtatgttgacacaatcttcttaattgattcgttgtttctgtttgactcatctcattacccacttccaatg |
46622975 |
T |
|
| Q |
225 |
aagaatggatttcaattatg |
244 |
Q |
| |
|
|||| | ||||||||||||| |
|
|
| T |
46622974 |
aagactagatttcaattatg |
46622955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 358 - 505
Target Start/End: Complemental strand, 9062627 - 9062478
Alignment:
| Q |
358 |
acaaaggcattcattttctaattctgattatcttccatttgagtactgctatgacttaaggtgattatagtttatagcttgagagatttcttttcttttt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9062627 |
acaaaggcattcattttctaattctgatgatcttccctttgagtactgctatgacttaaggtgattatagtttatagcttgaaagatttcttttcttttt |
9062528 |
T |
|
| Q |
458 |
aatttcaaattaat--catcaagcactgattcttggatattgttggagat |
505 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||| | ||||||||| |
|
|
| T |
9062527 |
aatttcaaattaatcacaccaagcactgattgttggatgtagttggagat |
9062478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University