View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_74 (Length: 251)
Name: NF1266_low_74
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 1316623 - 1316474
Alignment:
| Q |
28 |
ctggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcccg |
127 |
Q |
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| T |
1316623 |
ctggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcctg |
1316524 |
T |
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| Q |
128 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
177 |
Q |
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| T |
1316523 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 1316434 - 1316357
Alignment:
| Q |
174 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgct |
251 |
Q |
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| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgct |
1316357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 43486753 - 43486621
Alignment:
| Q |
29 |
tggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt--gccc |
126 |
Q |
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| T |
43486753 |
tggattaggatttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgggacc |
43486654 |
T |
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| Q |
127 |
gggaggcagggagataatgctggaaaaactagt |
159 |
Q |
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| T |
43486653 |
aggaggcagggagataatgctggaaaaactagt |
43486621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 43486549 - 43486472
Alignment:
| Q |
174 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgct |
251 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| |||||||||||||||||| |
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| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgct |
43486472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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