View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_75 (Length: 251)
Name: NF1266_low_75
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 28110032 - 28110122
Alignment:
| Q |
6 |
caacaagaggaagagtggagcctcaagtagtgggaagaagttttcttgaaaaagtgtagaggtaatattgatataaggttcttttctacaa |
96 |
Q |
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| T |
28110032 |
caacaagaggaagaatggaacctcgagtagtgggaagaagtcttcatgaaaaagtgtagaggtaatattgatataaggttcttttctacaa |
28110122 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 28110121 - 28110158
Alignment:
| Q |
153 |
aatatggcttttaattcttaatttaaatatatcaccta |
190 |
Q |
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| T |
28110121 |
aatatggcttttaattcttaatttaaatatatcaccta |
28110158 |
T |
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