View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_76 (Length: 251)
Name: NF1266_low_76
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_76 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40552799 - 40552559
Alignment:
| Q |
1 |
tgctattcagaatgaaactaaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaaca |
100 |
Q |
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| T |
40552799 |
tgctattcagaatgaaaccaaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaaca |
40552700 |
T |
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| Q |
101 |
ccaaattccatatgccatattattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
200 |
Q |
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| T |
40552699 |
ccaaattccatatgccatattattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
40552600 |
T |
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| Q |
201 |
gttatcatattacagaaagataaaacagatacgaagaataa |
241 |
Q |
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| T |
40552599 |
gttatcatattacagaaagataaaacagatacgaagaataa |
40552559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 22137753 - 22137532
Alignment:
| Q |
20 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccata |
119 |
Q |
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| T |
22137753 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccata |
22137654 |
T |
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| Q |
120 |
ttattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaag |
219 |
Q |
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| T |
22137653 |
ttattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaag |
22137554 |
T |
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| Q |
220 |
ataaaacagatacgaagaataa |
241 |
Q |
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| T |
22137553 |
ataaaacagatacgaagaataa |
22137532 |
T |
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