View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_79 (Length: 250)
Name: NF1266_low_79
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_79 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 47717703 - 47717480
Alignment:
| Q |
29 |
atattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaat |
128 |
Q |
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| T |
47717703 |
atattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcgttaat |
47717604 |
T |
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| Q |
129 |
taatcatcttaattg--cgttacaacatatttacaattaggtggtcttgttttactcgttcctttcttggagtttttctcattagttagtcattatagac |
226 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717603 |
taatcatcttaattgctcgttacaacatatttacaattaggtggtcttgttttactcgttcctttcttggagtttttctcattagttagtcattatagac |
47717504 |
T |
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| Q |
227 |
cttgtttgttggtattattttact |
250 |
Q |
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|||||||||||||||||||||||| |
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| T |
47717503 |
cttgtttgttggtattattttact |
47717480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 47759793 - 47759592
Alignment:
| Q |
51 |
cttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaattaatcatcttaattg--cgtta |
148 |
Q |
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| T |
47759793 |
cttctatgatcctacacctgcaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaattaatcatcttaattgctcgtta |
47759694 |
T |
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| Q |
149 |
caacatatttacaattaggtggtcttgttttactcgttcctttcttggagtttttctcattagttagtcattatagaccttgtttgttggtattatttta |
248 |
Q |
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| T |
47759693 |
caacatatttacaattaggtggtcatgttttacttgttcttatctttgactttttctcattagttagtcgttatagaccttgtttgttggtattatttta |
47759594 |
T |
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| Q |
249 |
ct |
250 |
Q |
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|| |
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| T |
47759593 |
ct |
47759592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 47745492 - 47745270
Alignment:
| Q |
29 |
atattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaagg---taattactaattgtcatt |
125 |
Q |
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|||||||| ||||||| ||||||||||||| |||||| | |||||||||| || ||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
47745492 |
atattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaacctccccaccagaagaaggtaataattactaattgtcatt |
47745393 |
T |
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| Q |
126 |
aattaatcat-cttaattgcgttacaacatatttacaattaggtggtcttgttttactcgttcctttcttggagtttttctcattagttagtcattatag |
224 |
Q |
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| T |
47745392 |
acctaatcatacttaattac--tacatggtgattacagttaggttaccttgttttacttgttcttatcttggcattttattcattagttagtcgttgtag |
47745295 |
T |
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| Q |
225 |
accttgtttgttggtattattttact |
250 |
Q |
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| T |
47745294 |
a-cttgtttgttggtaatattttact |
47745270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 47712900 - 47712793
Alignment:
| Q |
29 |
atattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaa- |
127 |
Q |
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|||||||| ||||| ||||| ||||| |||||||||| | |||||| ||| || |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
47712900 |
atattagatatgaagtctatcgcttctctgatcctacaacagtaataaaccaagatgaacactccccatcagaagaaggtaattactgattgtcattaac |
47712801 |
T |
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| Q |
128 |
ttaatcat |
135 |
Q |
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|||||||| |
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| T |
47712800 |
ttaatcat |
47712793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 47704902 - 47704799
Alignment:
| Q |
29 |
atattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaat |
128 |
Q |
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|||||||| |||||| | || ||||||||| |||||| | ||||||||||||| |||||||||||||||| |||||| |||| ||||| |||||| | |
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| T |
47704902 |
atattagatatgaaaccaatcccttctatggtcctacgacagtaatagacccagatgaaacctccccatca---gaaggtgattagtaattttcattagt |
47704806 |
T |
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| Q |
129 |
taatcat |
135 |
Q |
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||||||| |
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| T |
47704805 |
taatcat |
47704799 |
T |
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