View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_83 (Length: 214)
Name: NF1266_low_83
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 50720895 - 50721078
Alignment:
| Q |
21 |
ttcaacacatcaagtcacaccttgtcgctggtagcagtctccagacttaatggtaatgttgccttggaaccacaaaatggtgcatgcctcgtatagcctt |
120 |
Q |
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| T |
50720895 |
ttcaacacatcaagtcacaccttgtcgctggtagcagtctccagacttaatggtaatgttgccttggaaccacaaaatggtgcatgcctcgtatagcctt |
50720994 |
T |
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| Q |
121 |
ttgggaaatggtcgaataacagtttggcacgttatcctatattgattggaaggccgtttgaaaaatttaggttggaaatgagaa |
204 |
Q |
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| T |
50720995 |
ttgggaaatggtcgaataacagtttggcacgttatcctatactgattggaaggccgtttgaaaaatttaggttggaaatgagaa |
50721078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 50791953 - 50791770
Alignment:
| Q |
21 |
ttcaacacatcaagtcacaccttgtcgctggtagcagtctccagacttaatggtaatgttgccttggaaccacaaaatggtgcatgcctcgtatagcctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50791953 |
ttcaacacatcaagtcacaccttgtcgctggtagcagtctccagacttaatggtaatgttgccttggaaccacaaaatggtgcatgcctcgtatagcctt |
50791854 |
T |
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| Q |
121 |
ttgggaaatggtcgaataacagtttggcacgttatcctatattgattggaaggccgtttgaaaaatttaggttggaaatgagaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50791853 |
ttgggaaatggtcgaataacagtttggcacgttatcctatactgattggaaggccgtttgaaaaatttaggttggaaatgagaa |
50791770 |
T |
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