View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_low_9 (Length: 525)
Name: NF1266_low_9
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 3 - 496
Target Start/End: Original strand, 47916583 - 47917086
Alignment:
| Q |
3 |
agcagcaccacagacgatgaataagagagaatgaagagagagaaagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatc |
102 |
Q |
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| T |
47916583 |
agcagcaccaaaaacgatgaataagagagaatgaagagagagaaagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatc |
47916682 |
T |
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| Q |
103 |
ttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgtttggcgattcaattcacacaaccaagcagaaaaattcatga |
202 |
Q |
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| T |
47916683 |
ttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgtttggcgattcaattcacacaaccaagcagaaaaattcatga |
47916782 |
T |
|
| Q |
203 |
tgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatg----ctctacgtgccaaaaccc-------attatctctactctac |
291 |
Q |
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| T |
47916783 |
tgcaaaatccacacaccccatttcgcgcgtgggacatgctcattcatggtttatgctgcctctacgtgccaaaacccagaaaggattatctctactctac |
47916882 |
T |
|
| Q |
292 |
aacattgtgtggtaagtcgaaatgtttttgatctccaaatctgtttttgttgcgtgattcatagattttgcaatgtgggtcatgtgggtaagactattga |
391 |
Q |
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| T |
47916883 |
aacattgtgtggtaagtcgaaatg-ttttcatctccaaatctgtttttgttgcgtgattcatagattttgcaatgtgggtcatgtgggtaaggctattga |
47916981 |
T |
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| Q |
392 |
ggttgttgaattgatgaatgagtatagaaagcattacccttttgatgattttgtttgtagctctgtgatttcctcgttttgtagaattggaaaacctgaa |
491 |
Q |
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| T |
47916982 |
ggttgttgaattgatgaatgagtatagaaaggattacccttttgatgattttgtttgtagctctgtgatttcctcgttttgtagaattggaaaacctgaa |
47917081 |
T |
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| Q |
492 |
ctttc |
496 |
Q |
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||||| |
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| T |
47917082 |
ctttc |
47917086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 180 - 497
Target Start/End: Complemental strand, 16348317 - 16347993
Alignment:
| Q |
180 |
caaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatgctctacgtgccaaaaccca--- |
276 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
16348317 |
caaccaagcagaacaattcatgatgcaaaatccacacaccccatttggcgcgtgggacatgctcattcatggtttatgctccacgcgcgaaaacccagaa |
16348218 |
T |
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| Q |
277 |
----ttatctctactctacaacattgtgtggtaagtcgaaat-gt-ttttgatctccaaatctgttttt-gttgcgtgattcatagattttgcaatgtgg |
369 |
Q |
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| T |
16348217 |
aggattctctctgttctgcgacattgcttggtaaa---aaatcgtctttttatctcaaaaattgttttttgttgcgtgattcagagattttgcaatgtgg |
16348121 |
T |
|
| Q |
370 |
gtcatgtgggtaagactattgaggttgttgaattgatgaatgagtatagaaagcattacccttttgatgattttgtttgtagctctgtgatttcctcgtt |
469 |
Q |
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| T |
16348120 |
gtcatgtgggtaaggctattgaggttgttgaattgatgaatgagtatagaaaggattacccttttgatgattttgtttgtagttctgtggtttcggcgtt |
16348021 |
T |
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| Q |
470 |
ttgtagaattggaaaacctgaactttct |
497 |
Q |
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| T |
16348020 |
tagtagagctggaaaaccagaactttct |
16347993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 11782659 - 11782520
Alignment:
| Q |
26 |
agagagaatgaagagagagaaagtgagtaact----ggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaac |
121 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
11782659 |
agagagaaagaagagagagaaagtgagtaactaactggtttgaagctttttgtgaagcttgttgatttcagagagaacatcttcctgatctttccttaac |
11782560 |
T |
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| Q |
122 |
tgatccaattccttcgaattttccaaatttgaaacaatgt |
161 |
Q |
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||||||||||||||||||| |||||| |||||||||||| |
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| T |
11782559 |
cgatccaattccttcgaattctccaaaattgaaacaatgt |
11782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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