View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_high_15 (Length: 256)
Name: NF12670_high_15
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40489211 - 40489450
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40489211 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40489310 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40489311 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttc |
40489410 |
T |
|
| Q |
201 |
acaaacacaactcatcagtttcacattctccattttcttg |
240 |
Q |
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| T |
40489411 |
acaaacacaactcatcagtttcacattctccattttcttg |
40489450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40466229 - 40466439
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466229 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
40466328 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattcttc |
200 |
Q |
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| T |
40466329 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtgggttgcaattttccaattgttc |
40466428 |
T |
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| Q |
201 |
acaaacacaac |
211 |
Q |
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||||||||||| |
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| T |
40466429 |
acaaacacaac |
40466439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40472565 - 40472711
Alignment:
| Q |
1 |
attcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatgg |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
40472565 |
attcataatcaagatcaaaatattcaaccatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatgg |
40472664 |
T |
|
| Q |
101 |
cttccttgtgatgttgacttgttctgtgaggcacttgtagagataga |
147 |
Q |
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| T |
40472665 |
tttccttgtgacgttgatttattttgtgagatacttgtagatataga |
40472711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
38 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 7624788 - 7624847
Alignment:
| Q |
9 |
tcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatg |
68 |
Q |
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||||||||| ||||||||| || |||||||||||||||||||||| || ||||||||||| |
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| T |
7624788 |
tcaagatcagaatattcaatcaccctttgtttaaaactcttttaggagctgttgagaatg |
7624847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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