View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_high_3 (Length: 456)
Name: NF12670_high_3
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 446
Target Start/End: Original strand, 10255636 - 10256060
Alignment:
| Q |
21 |
aggtggactgttgtgctgttgtgactaaatgggggaggtgcagtagtaatgttagcaccaacattnnnnnnnntaaactgagnnnnnnnnn--ggttctg |
118 |
Q |
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| T |
10255636 |
aggtggactgttgtgctgttgtgattaaatgggggagatgcagtagtaatgttagcaccaacattaaaaaaaataaactgaggttttttttttggttccg |
10255735 |
T |
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| Q |
119 |
cctgttaaaactgcttctgaaattttgcagttcaggaaagatggtcgatgaaataaatgctatgaaggaaggtaagttttgtgaggtgtttaaattgaag |
218 |
Q |
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| T |
10255736 |
cctgtta---ctgcttctgaaattttgcagttcaggaaagatggtcgatgaaataaatgctatgaaggaaggtaagttttgtgaggtgtttaaattgaag |
10255832 |
T |
|
| Q |
219 |
gaggaacnnnnnnngaccggacactagtaacgttaataggccagaagcaagacattaaaaataatttaatggttcaaagatgctcgatgaaatagattaa |
318 |
Q |
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| T |
10255833 |
gaggaacaaaaaaagacgagacactagtaatgttaataggccagaagcaagacattaaaaataatttaatggtacaaagatgctcgatgaaatagattaa |
10255932 |
T |
|
| Q |
319 |
g----nnnnnnnnncttcatgttctgtatagctttaatggttcagaagcaagacattgaaaatactttctttcagaagcaaagacataagatgaaagatg |
414 |
Q |
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| T |
10255933 |
gtttttttttttttcttcattttctgtatagctttaatggttcagaagcaagacattgaaaata----ctttcagaagcaaagacataagatgaaagatg |
10256028 |
T |
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| Q |
415 |
aacagtaataatgatgatatgtgtcctctgtg |
446 |
Q |
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| T |
10256029 |
aacattaataatgatgatatgtgtcctctgtg |
10256060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 112 - 438
Target Start/End: Original strand, 27391312 - 27391635
Alignment:
| Q |
112 |
ggttctgcctgttaaaactgcttctgaaattttgcagttcaggaaagatggtcgatgaaataaatgctatgaaggaaggtaagttttgtgaggtgtttaa |
211 |
Q |
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| T |
27391312 |
ggttctgcctgttaaaactgcttctgaaattttgcagttcaggaaagatggtcgatgaaataaatgctatgctggaaggtaagttttgtgaggtgtttaa |
27391411 |
T |
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| Q |
212 |
attgaaggaggaacnnnnnnngaccggacactagtaacgttaataggccagaagcaagacattaaaaataatttaatggttcaaagatgctcgatgaaat |
311 |
Q |
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| T |
27391412 |
attgaaggaggaacaaaaaaagaccagacactagtaacgttaataggctagaagcaagacattaaaaataatttaatggttcaaagatgctcgatgaaat |
27391511 |
T |
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| Q |
312 |
agattaag-nnnnnnnnncttcatgttctgtatagctttaatggttcagaagcaagacattgaaaatactttctttcagaagcaaagacataagatgaaa |
410 |
Q |
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| T |
27391512 |
agattaagttttttttttcttcatgttctgtatagctttaatggttcagaagcaagacattgaaaata----ctttcagaagcaaagacataagatgaaa |
27391607 |
T |
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| Q |
411 |
gatgaacagtaataatgatgatatgtgt |
438 |
Q |
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| T |
27391608 |
gatgaacattaataatgatgatatgtgt |
27391635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 27391206 - 27391274
Alignment:
| Q |
18 |
gtgaggtggactgttgtgctgttgtgactaaat-gggggaggtgcagtagtaatgttagcaccaacatt |
85 |
Q |
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| T |
27391206 |
gtgaggtggactgttgtgctgttgtgactaaatggggggaggtgcagtagtaatgttagcaccaacatt |
27391274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 26778271 - 26778317
Alignment:
| Q |
179 |
tatgaaggaaggtaagttttgtgaggtgtttaaattgaaggaggaac |
225 |
Q |
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| T |
26778271 |
tatgaaggaaagtcagttttatgaggtgtttaaattgaaggaggaac |
26778317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 53600819 - 53600856
Alignment:
| Q |
239 |
acactagtaacgttaataggccagaagcaagacattaa |
276 |
Q |
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| T |
53600819 |
acactagtaacgtgaataggcaagaagcaagacattaa |
53600856 |
T |
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