View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_high_4 (Length: 440)
Name: NF12670_high_4
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 3722620 - 3722199
Alignment:
| Q |
15 |
aacaagtactttcgtcatgctaccggacaattatatgcaatttcacaagatttggcaacttatatatcagtaaatcagtaagttttgttttagttgcata |
114 |
Q |
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| T |
3722620 |
aacaagtactttcgtcatgctaccggacaattatatgcaatttcacaagagttggcaacttatatatcagtaaatcagtaagttttgttttagttgcata |
3722521 |
T |
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| Q |
115 |
aaaattgagatactagtgaaattgatattttacttataaacaattcctaatgattttgtggactttgtatcgttctttactcgttattaatgagtaaaac |
214 |
Q |
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| T |
3722520 |
aatattgagatattagtgaaattgatattctacttataaacaattactaatgattttgtggactttgtatcgttctttactcgttattaatgagtaaaac |
3722421 |
T |
|
| Q |
215 |
aatcattattaattgaatgatttttctgactaattttacatacaatatttaattctttgatagattaatagcagtttaattttataatgtcaggtatgtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
3722420 |
aatcattattaattgaatgatttttctgactaattttacacataatatttaattctttgatagattaatagtagtttaattttataatgtcagggatatg |
3722321 |
T |
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| Q |
315 |
ctgcataaatatgcgaatgaagatgtttcattgggatcatggttcataggcttaaatgtggagcatgttaatgatggaagaatgtgttgtggtacacccc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3722320 |
ctgcataaatatgcgaatgaagatgtttcattgggatcatggttcataggcttaaatgtggagcatgttaatgatggaagaatgtgttgtggtacacccc |
3722221 |
T |
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| Q |
415 |
ctggtatgttcctttgcttctc |
436 |
Q |
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| T |
3722220 |
ctggtatgttcttttgattctc |
3722199 |
T |
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