View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_high_5 (Length: 427)

Name: NF12670_high_5
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_high_5
NF12670_high_5
[»] chr2 (11 HSPs)
chr2 (82-391)||(2321650-2321972)
chr2 (262-391)||(2294335-2294464)
chr2 (11-103)||(2322015-2322107)
chr2 (288-357)||(2303977-2304046)
chr2 (122-242)||(2294512-2294633)
chr2 (172-242)||(2339306-2339375)
chr2 (11-100)||(2331566-2331653)
chr2 (205-242)||(2304241-2304278)
chr2 (170-242)||(2331412-2331484)
chr2 (259-364)||(2327562-2327664)
chr2 (11-42)||(2294657-2294688)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 82 - 391
Target Start/End: Complemental strand, 2321972 - 2321650
Alignment:
Q  82 tttagctaggacatacatttcttctttttcttcagtcgaccaaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagta 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321972 tttagctaggacatacatttcttctttttcttcagtcgaccaaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagta 2321873  T
Q  182 tcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaagtaagg--gatcattgt--------------attgtatg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || | |||              ||||||||    
T  2321872 tcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaagtaaggcatatgaatgtatgcataagggatcattgtatg 2321773  T
Q  266 aaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaacatt 365  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  2321772 aaacaaaatccgaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcac---acaacatt 2321676  T
Q  366 acatactccaaatcgttacacataac 391  Q
    ||||||||||||||||||||||||||    
T  2321675 acatactccaaatcgttacacataac 2321650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 262 - 391
Target Start/End: Complemental strand, 2294464 - 2294335
Alignment:
Q  262 tatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaa 361  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2294464 tatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagcagagaatctagggtggttcacacaacaa 2294365  T
Q  362 cattacatactccaaatcgttacacataac 391  Q
    |||||||||||||| ||||||||| |||||    
T  2294364 cattacatactccacatcgttacatataac 2294335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 2322107 - 2322015
Alignment:
Q  11 cacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggacatacatttct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2322107 cacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggacatacatttct 2322015  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 2304046 - 2303977
Alignment:
Q  288 aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 357  Q
    |||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||    
T  2304046 aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacaca 2303977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 2294633 - 2294512
Alignment:
Q  122 caaaataaaacaactttgatattacaaaaacaa-gatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttat 219  Q
    ||||||||| ||||||  ||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| | | |||||  |||||    
T  2294633 caaaataaaccaacttcaatattactacaacaaagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttat 2294535  T
Q  220 acaagaaacaagatatataagaa 242  Q
    ||| |||||||||||||||||||    
T  2294534 acaggaaacaagatatataagaa 2294512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 2339375 - 2339306
Alignment:
Q  172 attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 242  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||| |||||||||||||    
T  2339375 attgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaa 2339306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 2331653 - 2331566
Alignment:
Q  11 cacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggacatacatt 100  Q
    |||| ||||||||||||||  || |||||||||||||||||| | ||| | ||||||||||||||||  || | ||||||||||||||||    
T  2331653 cacaaatgtttagggaggatgcacaatctatattgtatgagatattataaacctaaacataatttcc--gtctcagctaggacatacatt 2331566  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 2304278 - 2304241
Alignment:
Q  205 catgttttattttatacaagaaacaagatatataagaa 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304278 catgttttattttatacaagaaacaagatatataagaa 2304241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 2331484 - 2331412
Alignment:
Q  170 acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 242  Q
    |||||||| |||||||| ||| |||||| | ||  |||||||||||||||| |||||||||||||| ||||||    
T  2331484 acattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataagaaacaagatatgtaagaa 2331412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 2327664 - 2327562
Alignment:
Q  259 ttgtatgaaacaaaatcccacca-tatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 357  Q
    ||||||||| |||||||  |||| | ||| ||||| |||||||||||||| ||||   |||||||||||  |||| |||||||||||  |||||||||||    
T  2327664 ttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgt---gttatgacattgccaag-agagaatctaggatggttcacaca 2327569  T
Q  358 acaacat 364  Q
    |||||||    
T  2327568 acaacat 2327562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 2294688 - 2294657
Alignment:
Q  11 cacagatgtttagggaggaaacataatctata 42  Q
    ||||||||||||||||||||||||||||||||    
T  2294688 cacagatgtttagggaggaaacataatctata 2294657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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