View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_low_1 (Length: 667)

Name: NF12670_low_1
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_low_1
NF12670_low_1
[»] chr8 (1 HSPs)
chr8 (17-535)||(31534573-31535109)
[»] chr4 (6 HSPs)
chr4 (308-467)||(43411498-43411660)
chr4 (56-190)||(4216080-4216217)
chr4 (54-155)||(21883138-21883243)
chr4 (56-150)||(3796956-3797053)
chr4 (106-152)||(21880792-21880838)
chr4 (62-151)||(31180395-31180487)
[»] chr5 (3 HSPs)
chr5 (54-154)||(20534688-20534791)
chr5 (17-190)||(21941304-21941480)
chr5 (103-155)||(11848156-11848208)
[»] chr1 (2 HSPs)
chr1 (55-154)||(21545137-21545241)
chr1 (22-155)||(25368678-25368815)
[»] chr2 (2 HSPs)
chr2 (80-155)||(27546891-27546969)
chr2 (61-155)||(14294817-14294914)
[»] chr6 (1 HSPs)
chr6 (81-155)||(26547783-26547860)
[»] chr3 (1 HSPs)
chr3 (116-155)||(13423535-13423574)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 31534573 - 31535109
Alignment:
Q  17 acaatcatgtggtggtcctattgttcataaaaaataagcaatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatgtatctagc 116  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31534573 acaatcatgtggtggtcttattattcataaaaaataagcaatcagaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatgtatctagc 31534672  T
Q  117 acatgtgaatgtcaaccattttatgatggtatatttgaacaacaattatccaattactcacacttccgtgctatagtcacattattgtt-agattataaa 215  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  31534673 acatgtgaatgtcaaccattttatgatggtatatttaaacagcaattatccaattactcacacttccgtgctatagtcacattattgttgagattatgaa 31534772  T
Q  216 aagtcataggataaaaagatatgt--------cgattaaatagaccgaactatatcaaacggcgggttataaggtaatatgagataatggtttgttcaac 307  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||    
T  31534773 aagtcataggataaaaagatatgtcgatgtgacgattaaatagaccgaactatatcaaatggcgggttataaggtaatatgagata--------ttcaac 31534864  T
Q  308 tttgcttatgattgtcataagtttgacattttaggaagatttta----------------aatagtataactgaacattcctttgtgtttatccttgttg 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||                |||||||||||||||||||||||| |||||||||||||||    
T  31534865 tttgcttatgattgtcataagtttgacattttaggaagattctaaatagtataactgaacaatagtataactgaacattcctttatgtttatccttgttg 31534964  T
Q  392 gtattttgcgagactgtaatgttgtatctgcatattatgtgtgtctaatttatatttcttattgctttaatcatttgagaaacttatggtataaa----a 487  Q
     |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  31534965 atattttgcgagactgtaatgttctatttgcatattatgtgtgtctaatttatatttcttattgctttaatcatttgagaaacttatggtataaaactta 31535064  T
Q  488 cttaaagaattccataagcttcagaaatattactacagacatagctta 535  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||    
T  31535065 cttaaagaattccataagcttcaaaaa---tactacagacatagctta 31535109  T

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Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 308 - 467
Target Start/End: Complemental strand, 43411660 - 43411498
Alignment:
Q  308 tttgcttatgattgtcataagtttgacattttaggaagattttaaatagtataactgaacattcctttgtgtttatc---cttgttggtattttgcgaga 404  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| || |||| ||| | |||| |||||||||||   ||||||||||||||| ||      
T  43411660 tttgcttatgattgtcataaatttgacatttttggaagattttaaagagcataagtgagccttccattgtgtttatcattcttgttggtattttgtgaac 43411561  T
Q  405 ctgtaatgttgtatctgcatattatgtgtgtctaatttatatttcttattgctttaatcattt 467  Q
     |||||||  ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  43411560 ttgtaatgccgtatctgcatattatgtgtgtataatttatatttcctatcgctttaatcattt 43411498  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 4216080 - 4216217
Alignment:
Q  56 aatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaat---gtatctagcacatgtgaatgtcaaccattttatgatggtatattt 152  Q
    ||||||||||||| |||||| |||| || | ||||||||||||| | |||||   || |||||||||||||||||  |||||||||||||||||||||||    
T  4216080 aatcaaaaacctttttccctctacgtggcgaaccttcgcatagagaccgaataatgtgtctagcacatgtgaatgataaccattttatgatggtatattt 4216179  T
Q  153 gaacaacaattatccaattactcacacttccgtgctat 190  Q
    ||   |  ||| ||||||| ||| ||||||||||||||    
T  4216180 gacggatgattgtccaattcctcccacttccgtgctat 4216217  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 21883243 - 21883138
Alignment:
Q  54 gcaatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatc-gaatg---tatctagcacatgtgaatgtcaaccattttatgatggtata 149  Q
    |||||| |||||||| |||||||||||| |||||||||| |||||||| | |||||   | ||||||||||||||||| ||||||| ||||||| |||||    
T  21883243 gcaatcgaaaacctttttccctttacgcagtgcaccttcacatagaaaaccgaatgatgtgtctagcacatgtgaatgacaaccatattatgatagtata 21883144  T
Q  150 tttgaa 155  Q
    ||||||    
T  21883143 tttgaa 21883138  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 3796956 - 3797053
Alignment:
Q  56 aatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaat---gtatctagcacatgtgaatgtcaaccattttatgatggtatat 150  Q
    ||||||||||||| |||| | |||| ||  |||||||||||||| | |||||   || |||||||||||||||||  |||||||||||||||||||||    
T  3796956 aatcaaaaacctttttccttgtacgtggcacaccttcgcatagagaccgaataatgtgtctagcacatgtgaatggtaaccattttatgatggtatat 3797053  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 21880838 - 21880792
Alignment:
Q  106 atgtatctagcacatgtgaatgtcaaccattttatgatggtatattt 152  Q
    |||| ||||||||||||||||| |||||||||||||||  |||||||    
T  21880838 atgtgtctagcacatgtgaatgacaaccattttatgataatatattt 21880792  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 31180395 - 31180487
Alignment:
Q  62 aaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatg---tatctagcacatgtgaatgtcaaccattttatgatggtatatt 151  Q
    ||||||| ||||||||| | |||||||||| ||||| | | ||||||   | |||||| ||||||||||  ||||||||||| ||||||||||    
T  31180395 aaacctttttccctttatgtggtgcacctttgcatatataccgaatgatgtgtctagcgcatgtgaatgataaccattttattatggtatatt 31180487  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 20534688 - 20534791
Alignment:
Q  54 gcaatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatgta---tctagcacatgtgaatgtcaaccattttatgatggtatat 150  Q
    |||||| |||||||| |||||| ||||| ||| ||||||||||| | | |||||| |   ||||||||| |||||| |||| ||||||||||||||||||    
T  20534688 gcaatcgaaaacctttttccctctacgcagtgaaccttcgcataaagaccgaatgaagtgtctagcacacgtgaatatcaatcattttatgatggtatat 20534787  T
Q  151 ttga 154  Q
    ||||    
T  20534788 ttga 20534791  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 21941304 - 21941480
Alignment:
Q  17 acaatcatgtggtggtcctattgttcataaaaaataagcaatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatg---tatct 113  Q
    |||| ||||||||||| ||| ||| ||| || ||   ||||||| |||| || |||||| ||| ||||||||||| |||| || | ||||||   | |||    
T  21941304 acaagcatgtggtggttctactgtccatcaataaagggcaatcagaaacttttttccctctactcggtgcacctttgcattgacaacgaatgatttgtct 21941403  T
Q  114 agcacatgtgaatgtcaaccattttatgatggtatatttgaacaacaattatccaattactcacacttccgtgctat 190  Q
    | ||||||||||||  ||  |||||||||||||||||||||| ||   || ||||||| |||  |||||||||||||    
T  21941404 aacacatgtgaatgaaaattattttatgatggtatatttgaagaatggttgtccaattcctctgacttccgtgctat 21941480  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 11848208 - 11848156
Alignment:
Q  103 cgaatgtatctagcacatgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    ||||||| ||||| ||||||||||| |||||||||||| ||||| ||||||||    
T  11848208 cgaatgtgtctagaacatgtgaatgacaaccattttattatggtttatttgaa 11848156  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 21545137 - 21545241
Alignment:
Q  55 caatcaaaaaccttattccctttacgcggtgcaccttcgcatagaaatcga---atgtatctagcacatgtgaatgtc--aaccattttatgatggtata 149  Q
    |||||||||| ||| |||||| ||||||||||| |||| |||||| | |||   |||| ||||||||||||||||| |  ||||||||||||||| ||||    
T  21545137 caatcaaaaatctttttccctctacgcggtgcatcttcccatagagaccgaatgatgtgtctagcacatgtgaatgacaaaaccattttatgatgatata 21545236  T
Q  150 tttga 154  Q
    |||||    
T  21545237 tttga 21545241  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 25368815 - 25368678
Alignment:
Q  22 catgtggtggtcctattgttcataaaaaataagcaatcaaaaaccttatt-ccctttacgcggtgcaccttcgcatagaaatcgaatg---tatctagca 117  Q
    ||||||||||| ||| ||| ||| || ||  ||||||||||||  || || |||||||||  ||| |||||||||||||||| |||||   | |||||||    
T  25368815 catgtggtggttctactgtacatcaataaagagcaatcaaaaatattttttccctttacgtagtgaaccttcgcatagaaattgaatgatatgtctagca 25368716  T
Q  118 catgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    |||||| ||| |||| |||| ||| |||||||||||||    
T  25368715 catgtggatgacaactatttgatggtggtatatttgaa 25368678  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 27546891 - 27546969
Alignment:
Q  80 gcggtgcaccttcgcatagaaatcgaatg---tatctagcacatgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    |||||||||  ||||||||||||||||||   | |||| | |||||||||| |||||||||||||||||| ||||||||    
T  27546891 gcggtgcacaatcgcatagaaatcgaatgatgtgtctaactcatgtgaatgacaaccattttatgatggtgtatttgaa 27546969  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 14294817 - 14294914
Alignment:
Q  61 aaaaccttattccctttacgcggtgcaccttcgcatagaaatcgaatgta---tctagcacatgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    |||||||| |||||| |||| |||| |||||| |||||| || ||||||    || |||||||||||||  |||||||||||||||| ||||||||||    
T  14294817 aaaacctttttccctctacgtggtgaaccttcacatagagattgaatgttgtgtcaagcacatgtgaataacaaccattttatgatgatatatttgaa 14294914  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 26547783 - 26547860
Alignment:
Q  81 cggtgcaccttcgcatagaaatcgaatg---tatctagcacatgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    |||||||||||| |||||| | ||||||   | |||| |||||||||||| ||||||||| |||||||||||||||||    
T  26547783 cggtgcaccttcacatagagaccgaatgatgtgtctaacacatgtgaatgacaaccatttcatgatggtatatttgaa 26547860  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 13423574 - 13423535
Alignment:
Q  116 cacatgtgaatgtcaaccattttatgatggtatatttgaa 155  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  13423574 cacatgtgaatcacaaccattttatgatggtatatttgaa 13423535  T

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