View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_low_11 (Length: 377)

Name: NF12670_low_11
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_low_11
NF12670_low_11
[»] chr6 (4 HSPs)
chr6 (19-362)||(30574858-30575203)
chr6 (137-188)||(29657467-29657518)
chr6 (140-188)||(1572751-1572799)
chr6 (140-188)||(1573962-1574010)
[»] chr7 (8 HSPs)
chr7 (19-263)||(40692015-40692262)
chr7 (19-232)||(41495745-41495943)
chr7 (19-102)||(40690049-40690133)
chr7 (137-188)||(15743509-15743560)
chr7 (137-198)||(12018539-12018599)
chr7 (119-159)||(40690132-40690173)
chr7 (140-188)||(29418264-29418312)
chr7 (140-188)||(15742366-15742414)
[»] chr2 (8 HSPs)
chr2 (57-264)||(19019591-19019799)
chr2 (42-261)||(3029896-3030113)
chr2 (19-264)||(4250858-4251102)
chr2 (137-188)||(4518984-4519035)
chr2 (137-188)||(44112941-44112992)
chr2 (140-181)||(44503204-44503245)
chr2 (19-51)||(3030116-3030148)
chr2 (19-51)||(19019846-19019878)
[»] scaffold0242 (4 HSPs)
scaffold0242 (19-263)||(11550-11795)
scaffold0242 (19-263)||(6944-7189)
scaffold0242 (19-263)||(9246-9493)
scaffold0242 (57-263)||(20422-20630)
[»] chr3 (11 HSPs)
chr3 (19-263)||(19316544-19316787)
chr3 (19-263)||(19319259-19319502)
chr3 (98-241)||(44211426-44211567)
chr3 (118-241)||(54358973-54359096)
chr3 (118-241)||(54361215-54361338)
chr3 (137-188)||(30574624-30574675)
chr3 (137-188)||(6530076-6530127)
chr3 (137-187)||(30575786-30575836)
chr3 (137-188)||(6528987-6529038)
chr3 (137-188)||(43679039-43679090)
chr3 (118-190)||(41513452-41513525)
[»] chr1 (13 HSPs)
chr1 (19-264)||(44611818-44612086)
chr1 (57-231)||(21899448-21899619)
chr1 (62-241)||(41642145-41642320)
chr1 (131-234)||(14642621-14642724)
chr1 (137-188)||(44031561-44031612)
chr1 (137-188)||(28876768-28876819)
chr1 (137-188)||(37811038-37811089)
chr1 (19-51)||(21899387-21899419)
chr1 (137-180)||(19620367-19620410)
chr1 (131-193)||(44872937-44872997)
chr1 (137-180)||(51837774-51837817)
chr1 (148-239)||(36283601-36283692)
chr1 (140-188)||(51836598-51836646)
[»] chr8 (6 HSPs)
chr8 (19-231)||(30955132-30955344)
chr8 (19-231)||(30957785-30957997)
chr8 (166-231)||(40984866-40984931)
chr8 (131-178)||(36824584-36824631)
chr8 (120-159)||(40985187-40985227)
chr8 (144-186)||(31310193-31310235)
[»] chr5 (6 HSPs)
chr5 (131-234)||(41574177-41574279)
chr5 (98-239)||(15480848-15480989)
chr5 (118-241)||(14248504-14248627)
chr5 (119-181)||(27439060-27439123)
chr5 (137-181)||(41422468-41422512)
chr5 (140-188)||(14672527-14672575)
[»] chr4 (7 HSPs)
chr4 (131-190)||(42819454-42819513)
chr4 (203-243)||(26855797-26855837)
chr4 (137-181)||(30101580-30101624)
chr4 (140-188)||(56331997-56332045)
chr4 (137-188)||(30100435-30100486)
chr4 (118-177)||(26855851-26855911)
chr4 (140-188)||(48367677-48367725)
[»] scaffold0167 (1 HSPs)
scaffold0167 (119-191)||(24871-24943)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 30575203 - 30574858
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30575203 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 30575104  T
Q  119 ttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttattttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |    
T  30575103 ttagaaaccttaggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctggggttacaggggttttcttctacaatacatctattttca 30575004  T
Q  219 attcaataatacagtttatttc--tgtgtgaaatcgggtctctatcagttctcaggatattttgctgcaggtgtttgttccttttgtctctattgcagat 316  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30575003 attcaataatacagtttatttctttgtgtgaaatcgggtctctatcagttctcagtatattttgctgcaggtgtttgttccttttgtctctattgcagat 30574904  T
Q  317 gctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30574903 gctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 30574858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 29657467 - 29657518
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  29657467 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 29657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 1572799 - 1572751
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1572799 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 1574010 - 1573962
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1574010 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 40692015 - 40692262
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggta---gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgtt 115  Q
    |||||||||||||||||||||||||||||||||  | |   |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  40692015 cttagagggagagttagttacatgagagagagagagaaagtgagttggttatataaaggaatgagaatagagagtgaggattatctttgatcattttgtt 40692114  T
Q  116 cggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatt 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||  ||||||| ||||    
T  40692115 cggttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctgggg-tacaggggttttcttctgtaatacatctatt 40692213  T
Q  215 tttaattcaataatacagtttatttctgtgtgaaatcgggtctctatca 263  Q
    || |||||||||||||| ||||||||||||| || |||||| |||||||    
T  40692214 ttcaattcaataatacaatttatttctgtgttaattcgggtttctatca 40692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 41495745 - 41495943
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 118  Q
    |||||||||||||||||||||| |||||| |||| || ||||| |||||||| ||||||||||| ||||||| |||| |||||||||||| ||||||| |    
T  41495745 cttagagggagagttagttacacgagagaaagaaagtggagttagttatataaaggaatgagaaaagagagtaagggatatctttgatca-tttgttcag 41495843  T
Q  119 ttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttattttta 218  Q
    |||| ||||||||| || |              | |||||| |||| |||||||||||||||||||||||||||| ||||||  ||||||| |||||  |    
T  41495844 ttag-aaccttagggtttg-------------agcctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatctatttcca 41495929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 40690049 - 40690133
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatctt 102  Q
    |||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  40690049 cttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctt 40690133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 15743509 - 15743560
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  15743509 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 15743560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 12018599 - 12018539
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttctt 198  Q
    ||||||||||||||| ||||||  |||| ||||||||||||| |||||||||| ||||||||    
T  12018599 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 12018539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 40690132 - 40690173
Alignment:
Q  119 ttagaaaccttagg-tttaggcagagagagaaatgtctcttc 159  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  40690132 ttagaaaccttagggtttaggcagagagagaaatgtctcttc 40690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 29418312 - 29418264
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  29418312 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 29418264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 15742366 - 15742414
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  15742366 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 15742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 57 - 264
Target Start/End: Complemental strand, 19019799 - 19019591
Alignment:
Q  57 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtct 155  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19019799 gagttggttatataaagaaatgagaatagagagtgaggattatctttgatcattttgttcggttagaaaccttagggtttaggcagagagagaaatgtct 19019700  T
Q  156 cttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggt 255  Q
    |||| |||| | ||||||||| |||||||||||||| | ||||||  ||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  19019699 cttctctgaggggcttttgctatggggttacagggggtctcttctgtaatacatctattgtcaattcaataatacagtttatttctgtgtgaaatcgggt 19019600  T
Q  256 ctctatcag 264  Q
    |||||||||    
T  19019599 ctctatcag 19019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 3030113 - 3029896
Alignment:
Q  42 gagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggca 140  Q
    ||||||||||  || |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  3030113 gagagagagagagtggagttggttatataaaggaatgagaattgagagtgagggatatctttgatcattttgttcagttagaaaccttagggtttaggca 3030014  T
Q  141 gagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatacagtttatttc 240  Q
    ||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||  ||||||| |||||| |||||   |||||||||||||||    
T  3030013 gagagagaaatgtctcttatctgaggagcttttgctatggggttacaggggttttcttctgtaatacatctattttcaattc---aatacagtttatttc 3029917  T
Q  241 tgtgtgaaatcgggtctctat 261  Q
    |||||||||||||||||||||    
T  3029916 tgtgtgaaatcgggtctctat 3029896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 4250858 - 4251102
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga---aggtagag---ttggttatatataggaatgagaatagagagtgagggttatctttgatcatttt 112  Q
    |||||||||||||||||||||||||||||||||   ||  || |   ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  4250858 cttagagggagagttagttacatgagagagagagagagaaagtgagtttggttatataaaggaatgagaatagagagtgaggattatcttggatcatttt 4250957  T
Q  113 gttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacattt 211  Q
    |||| ||||| ||||||| ||||| ||||||||||| ||||||||||| |||| ||| |||||||         |||||||| ||||||  ||||||| |    
T  4250958 gttcagttag-aaccttagggtttgggcagagagaggaatgtctcttctctgaggagtttttgct---------caggggttatcttctgtaatacatct 4251047  T
Q  212 atttttaattcaataatacagtttatt--tctgtgtgaaatcgggtctctatcag 264  Q
    |||||  ||||||||||||| ||||||  ||||||| || |||||| ||||||||    
T  4251048 attttccattcaataatacaatttatttgtctgtgttaattcgggtttctatcag 4251102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 4518984 - 4519035
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  4518984 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 4519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 44112992 - 44112941
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||| ||||||    
T  44112992 ggcagagagagaaatgtctcttctctgaggagctgttgctctgggattacag 44112941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 44503204 - 44503245
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggg 181  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  44503204 agagagagagatgtctcttctctgaagagcttttgctctggg 44503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 3030148 - 3030116
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga 51  Q
    |||||||||||||||||||||||||||||||||    
T  3030148 cttagagggagagttagttacatgagagagaga 3030116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 19019878 - 19019846
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga 51  Q
    |||||||||||||||||||||||||||||||||    
T  19019878 cttagagggagagttagttacatgagagagaga 19019846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 11550 - 11795
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 118  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |    
T  11550 cttagagggagagttagttacatgagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgatca-tttgttcag 11647  T
Q  119 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttt 216  Q
    |||  ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||  ||||||| ||||||    
T  11648 ttaataaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacagggggttttcttctgtaatacatctatttt 11746  T
Q  217 taattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 263  Q
     |||| |||||||| |||||||||  |||||||||||||||||||||||    
T  11747 caatttaataatactgtttatttctttgtgtgaaatcgggtctctatca 11795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 6944 - 7189
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 118  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |    
T  6944 cttagagggagagttagttacatgagagagaggaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgatca-tttgttcag 7041  T
Q  119 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttt 216  Q
    |||  ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||||||||||||  ||||||| ||||||    
T  7042 ttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggttacagggggttttcttctgtaatacatctatttt 7140  T
Q  217 taattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 263  Q
     |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  7141 caatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 7189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 9246 - 9493
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttc 116  Q
    |||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  9246 cttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgatca-tttgttc 9343  T
Q  117 ggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatt 214  Q
     ||||  ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||||||||||||  ||||||| ||||    
T  9344 agttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggttacagggggttttcttctgtaatacatctatt 9442  T
Q  215 tttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 263  Q
    || |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  9443 ttcaatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 9493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 57 - 263
Target Start/End: Original strand, 20422 - 20630
Alignment:
Q  57 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtct 155  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||  ||||||| |||||||||||||||||||||||||    
T  20422 gagttggttatataaaggaatgagaatagagagtgaggattatctttgatca-tttgttcagttaataaccttagggtttaggcagagagagaaatgtct 20520  T
Q  156 cttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcg 252  Q
    |||| |||| ||||||||||||| |||||||| |||||||||||||  ||||||| |||||| |||| |||||||| |||||||||  ||||||||||||    
T  20521 cttctctgaggagcttttgctct-gggttacagggggttttcttctgtaatacatctattttcaatttaataatactgtttatttctttgtgtgaaatcg 20619  T
Q  253 ggtctctatca 263  Q
    |||||||||||    
T  20620 ggtctctatca 20630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 19316544 - 19316787
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatc-tttgatcattttgttcg 117  Q
    ||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||  ||||||||||||||| |||||||| |||||||     
T  19316544 cttagagggagagttagttacatcagagagagaaagtggagttggttatataaaggaatgagaat--agagtgagggttatcttttgatca-tttgttca 19316640  T
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 216  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||  |||||||  |||||    
T  19316641 gttag-aaccttagggtttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatcttctgtaatacatcaatttt 19316738  T
Q  217 taattcaataatacagtttatt--tctgtgtgaaatcgggtctctatca 263  Q
     || |||| ||| |||||||||  |||||||||||| ||||||||||||    
T  19316739 caactcaagaatgcagtttatttctctgtgtgaaattgggtctctatca 19316787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 19319259 - 19319502
Alignment:
Q  19 cttagagggagagttagttacatgagagagagaaggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcgg 118  Q
    ||||||||||||||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||       
T  19319259 cttagagggagagttagttacatcaaagagagaaagtggagttggttatataaaggaatgagaatagagagtgaggtttatctttgatcatttttttttt 19319358  T
Q  119 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttattttt 217  Q
    |||  ||||||| ||||| |||  |||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||  |||||||  |||||     
T  19319359 tta-taaccttagggtttgggc--agagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatcttctgtaatacatcaattttc 19319454  T
Q  218 aattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 263  Q
    || |||||||| |||||||||||  |||||||||| ||||||||||||    
T  19319455 aactcaataatgcagtttatttctttgtgtgaaattgggtctctatca 19319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 44211426 - 44211567
Alignment:
Q  98 atctttgatcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttct 197  Q
    ||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||    
T  44211426 atctttgatcattttgttcagttagaa-ccttagggttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatct 44211523  T
Q  198 tctagaatacatttatttttaattcaataatacagtttatttct 241  Q
    |||  || |||| |||||| |||||||||||||| |||||||||    
T  44211524 tctgtaacacatctattttcaattcaataatacaatttatttct 44211567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 54358973 - 54359096
Alignment:
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54358973 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54359071  T
Q  217 taattcaataatacagtttatttct 241  Q
     |||||||||||||| |||||||||    
T  54359072 caattcaataatacaatttatttct 54359096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 54361215 - 54361338
Alignment:
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54361215 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54361313  T
Q  217 taattcaataatacagtttatttct 241  Q
     |||||||||||||| |||||||||    
T  54361314 caattcaataatacaatttatttct 54361338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 30574675 - 30574624
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  30574675 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 30574624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 6530127 - 6530076
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||| |||||||||||||||| |||| |||||||||||||||| ||||||    
T  6530127 ggcagaaagagaaatgtctcttctctgaggagcttttgctctgggattacag 6530076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 30575836 - 30575786
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca 187  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||    
T  30575836 ggcagagagagaaatgtctcttctctgaggagcttttgctttgggattaca 30575786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 6529038 - 6528987
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||| ||||||||||||||||  ||| |||||||||||||||| ||||||    
T  6529038 ggcagaaagagaaatgtctcttctttgaggagcttttgctctgggattacag 6528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 43679039 - 43679090
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||||||||||||||||| |||| |||| |||||||| || ||||||    
T  43679039 ggcagagagagaaatgtctcttctctgaggagcgtttgctctaggattacag 43679090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 41513525 - 41513452
Alignment:
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 190  Q
    |||||||||| || ||||| ||||||||||||||||| ||||| || | ||||| |||||||||| ||| ||||    
T  41513525 gttagaaaccgtatggtttgggcagagagagaaatgtttcttctctaaggagctcttgctctgggattataggg 41513452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 44611818 - 44612086
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga-----aggtag--agttggttatatataggaatgagaatagagagtgagggttatctttgatcattt 111  Q
    |||||||||||||||||||||||||||||||||     ||  ||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  44611818 cttagagggagagttagttacatgagagagagagagagagaaagtgagttggttatataaaggaatgagaatagagagtgaggattatctttgatcattt 44611917  T
Q  112 tgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggtttt-------------ct 197  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||  |||||||||||||||||             ||    
T  44611918 tgttcagttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggggcttttgctacggggttacaggggttttcttctgtaatacact 44612017  T
Q  198 tctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatcag 264  Q
    |||  ||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44612018 tctgtaatacatctattgtcaattcaataatacagtttatttctttgtgtgaaatcgggtctctatcag 44612086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 21899448 - 21899619
Alignment:
Q  57 gagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtct 155  Q
    |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||  | || ||||||| |||||||||||||||||||||||||    
T  21899448 gagttggttatataaaggaatgagaatagagagtgaggattatc--tgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtct 21899543  T
Q  156 cttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataataca 231  Q
    |||| |||| ||||||||||||| ||||||||| | || ||||||  |||||||  ||||| ||||||||| ||||    
T  21899544 cttctctgaggagcttttgctctagggttacagagattatcttctgtaatacatcaattttcaattcaatagtaca 21899619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 41642145 - 41642320
Alignment:
Q  62 ggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttca 160  Q
    ||||||||| ||||||||||  | ||||| |||   |||||||||||||||||||  | || ||||||| |||||||||||||||||||||||||||||     
T  41642145 ggttatataaaggaatgagaggatagagttaggc--atctttgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttct 41642240  T
Q  161 ctgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatacagtttatttct 241  Q
    |||| |||||| |||||| |||||||| ||  | ||||||  ||||||| |||||| |||||||||||||| |||||||||    
T  41642241 ctgaggagcttctgctctagggttaca-ggactatcttctgtaatacatctattttcaattcaataatacaatttatttct 41642320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 14642621 - 14642724
Alignment:
Q  131 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 230  Q
    ||||||||| ||||||||||| | |||||  ||| |||||||||||||||||| ||| ||||| ||||||   |||||| |||||| |||||||||||||    
T  14642621 ggtttaggcggagagagaaatatttcttctttgaggagcttttgctctggggtaacaagggttatcttctgatatacatctattttcaattcaataatac 14642720  T
Q  231 agtt 234  Q
    ||||    
T  14642721 agtt 14642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 44031612 - 44031561
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  44031612 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 44031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 28876768 - 28876819
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  28876768 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 28876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 37811038 - 37811089
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  37811038 ggcagagacagaaatgtctcttctctgaggagcttttgctctgggattacag 37811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 21899387 - 21899419
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga 51  Q
    |||||||||||||||||||||||||||||||||    
T  21899387 cttagagggagagttagttacatgagagagaga 21899419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 19620410 - 19620367
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 180  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  19620410 ggcagagagagaaatgtctcttctctgaggagctcttgctctgg 19620367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 44872997 - 44872937
Alignment:
Q  131 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggtt 193  Q
    ||||| |||||||||| |||||||||||| | ||||  ||||||||||||| |||||||||||    
T  44872997 ggtttgggcagagagaaaaatgtctcttctcagaag--cttttgctctgggattacaggggtt 44872937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 51837774 - 51837817
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 180  Q
    |||||||||||| |||||||||| |||| |||||||||||||||    
T  51837774 ggcagagagagagatgtctcttctctgaggagcttttgctctgg 51837817  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 36283692 - 36283601
Alignment:
Q  148 aaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttttaattcaataatacagtttattt 239  Q
    |||||||||||  |||| ||||||||||| ||||||||||  ||| || |||||  |||| || |||||| || |||||||||||||||||||    
T  36283692 aaatgtctcttttctgaggagcttttgctatggggttacattggggttccttctgtaatatatctattttcaa-tcaataatacagtttattt 36283601  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 51836598 - 51836646
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  51836598 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 51836646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 30955344 - 30955132
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttc 116  Q
    |||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30955344 cttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgatcattttgttc 30955246  T
Q  117 ggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttattt 215  Q
      | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || ||||||  |||||||  ||||    
T  30955245 -atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacagagattatcttctgtaatacatcaattt 30955148  T
Q  216 ttaattcaataataca 231  Q
    | ||||||||| ||||    
T  30955147 tcaattcaatagtaca 30955132  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 30957997 - 30957785
Alignment:
Q  19 cttagagggagagttagttacatgagagagaga--aggtagagttggttatatataggaatgagaatagagagtgagggttatctttgatcattttgttc 116  Q
    |||||||||||||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30957997 cttagagggagagttagttacatgagagagagagaaagt-gagttggttatataaaggaatgagaatagagagtgaggattatctttgatcattttgttc 30957899  T
Q  117 ggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttattt 215  Q
      | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || ||||||  |||||||  ||||    
T  30957898 -atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacagagattatcttctgtaatacatcaattt 30957801  T
Q  216 ttaattcaataataca 231  Q
    | ||||||||| ||||    
T  30957800 tcaattcaatagtaca 30957785  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 40984931 - 40984866
Alignment:
Q  166 gagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataataca 231  Q
    ||||||||||| |||||||||||||||| | ||||  ||||||| |||||| ||||||||||||||    
T  40984931 gagcttttgctatggggttacaggggttattttctgtaatacatctattttcaattcaataataca 40984866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 36824584 - 36824631
Alignment:
Q  131 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctct 178  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  36824584 ggtttaggcagagagagaaatgtctcttctctgaggagcttatgctct 36824631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 40985227 - 40985187
Alignment:
Q  120 tagaaaccttagg-tttaggcagagagagaaatgtctcttc 159  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  40985227 tagaaaccttagggtttaggcagagagagaaatgtctcttc 40985187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 31310235 - 31310193
Alignment:
Q  144 agagaaatgtctcttcactgaagagcttttgctctggggttac 186  Q
    ||||||||| |||||| || |||||||||||||||||||||||    
T  31310235 agagaaatgcctcttccctcaagagcttttgctctggggttac 31310193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 41574279 - 41574177
Alignment:
Q  131 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 230  Q
    ||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  41574279 ggtttaggcagat-gagaaatgtctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatttattttcaattcaataatac 41574181  T
Q  231 agtt 234  Q
    ||||    
T  41574180 agtt 41574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 15480989 - 15480848
Alignment:
Q  98 atctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttc 196  Q
    ||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||  ||| ||| |||||||| ||||||||||||||| ||    
T  15480989 atctttgatcattttgttcagttagaa-ccttagggtttgggccgagagaggaatgtctcttctatgaggagtttttgctcaggggttacaggggttatc 15480891  T
Q  197 ttctagaatacatttatttttaattcaataatacagtttattt 239  Q
    ||||  ||||||| |||||| |||||||||||||| |||||||    
T  15480890 ttctgtaatacatctattttcaattcaataatacaatttattt 15480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 14248627 - 14248504
Alignment:
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 216  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  14248627 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 14248529  T
Q  217 taattcaataatacagtttatttct 241  Q
     |||||||||||||| ||| |||||    
T  14248528 caattcaataatacaatttctttct 14248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 27439123 - 27439060
Alignment:
Q  119 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggg 181  Q
    |||| ||||||| ||||||||||||||||||||| ||||||| |||| |||||| |||||||||    
T  27439123 ttaggaaccttatggtttaggcagagagagaaatatctcttctctgaggagcttatgctctggg 27439060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 41422468 - 41422512
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 181  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  41422468 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 41422512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 14672527 - 14672575
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  14672527 agagagagagatgtctcttctctgaggagcttttgctttgggattacag 14672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 42819454 - 42819513
Alignment:
Q  131 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 190  Q
    ||||||||| ||||||||||||||||||| |||| ||||| |||||||||| ||| ||||    
T  42819454 ggtttaggctgagagagaaatgtctcttctctgaggagctcttgctctgggattataggg 42819513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 26855837 - 26855797
Alignment:
Q  203 aatacatttatttttaattcaataatacagtttatttctgt 243  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  26855837 aatacatatattttcaattcaataatacagtttatttctgt 26855797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 30101580 - 30101624
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 181  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  30101580 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 30101624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 56331997 - 56332045
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  56331997 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 56332045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 30100435 - 30100486
Alignment:
Q  137 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  30100435 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 30100486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 26855911 - 26855851
Alignment:
Q  118 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctc 177  Q
    ||||||||||||  ||||| |||||||| ||||| |||||||| |||| ||||||||||||    
T  26855911 gttagaaaccttctggtttgggcagagatagaaacgtctcttctctgaggagcttttgctc 26855851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 48367677 - 48367725
Alignment:
Q  140 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 188  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  48367677 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 48367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 24943 - 24871
Alignment:
Q  119 ttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacagggg 191  Q
    |||||||||||| | || ||||||||||||||| |||||||  ||| |||||| |||| |||| |||||||||    
T  24943 ttagaaaccttatggtttggcagagagagaaatatctcttctttgaggagcttctgctttgggcttacagggg 24871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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