View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_12 (Length: 317)
Name: NF12670_low_12
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 2382823 - 2383124
Alignment:
| Q |
1 |
taaaatcttgattttgatgattatttgtggtgacgattagataaagctttttaatttagttctaatgcgcgttaattgtaatatgtttgaattgctggtg |
100 |
Q |
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| T |
2382823 |
taaaatcttgattttgaacattatttgtggtgatgattagataaagctttttaatttagttctaatgcgcgttaattgtaacgtgtttgaattgctggtg |
2382922 |
T |
|
| Q |
101 |
agtttgataaaattatggtgagatgtgattttgttgaagctcaagattgtagcttctgctaaaatcgtggtagcgaccatgattccgctaaattcactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382923 |
agtttgataaaattatggtgagatgtgattttgttgaagctcaagattgtagcttctgctaaaatcgtggtagcgaccatgattccgctaaattcactgt |
2383022 |
T |
|
| Q |
201 |
caattcatacatgctgtatcatttcaatgaatgacactttgagttatcatttcaattcatacatgttaatttggacatgaaatcgttccgatatagctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2383023 |
caattcatacatgctgtatcatttcaatgaatgacactttgagtta-catttcaattcatacatgttaatttggacatgaaatcgttccgatatagctct |
2383121 |
T |
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| Q |
301 |
ctg |
303 |
Q |
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||| |
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| T |
2383122 |
ctg |
2383124 |
T |
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