View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_14 (Length: 295)
Name: NF12670_low_14
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 49684340 - 49684074
Alignment:
| Q |
19 |
gtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaatattaaagg |
118 |
Q |
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| T |
49684340 |
gtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaatattaaagg |
49684241 |
T |
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| Q |
119 |
ttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggag |
218 |
Q |
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| T |
49684240 |
ttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggag |
49684141 |
T |
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| Q |
219 |
gtgttaacttcttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaacg |
285 |
Q |
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| T |
49684140 |
gtgttaacttcttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaacg |
49684074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 130 - 284
Target Start/End: Complemental strand, 49676198 - 49676044
Alignment:
| Q |
130 |
agtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttc |
229 |
Q |
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| T |
49676198 |
agtgttatattaaatccggcttgctgactgaccgctgacattagaagtagtcgattcactatcccatttatccgtcacacccgtaggagacgttaacttt |
49676099 |
T |
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| Q |
230 |
ttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaac |
284 |
Q |
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| T |
49676098 |
ttattcttcaacaatttcatctcaacgtgatcgggtgaggacgatgacagtgaac |
49676044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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