View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_15 (Length: 279)
Name: NF12670_low_15
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 46927982 - 46927716
Alignment:
| Q |
1 |
taatattgtattagaaaaggaccggagtgatattaattaacaaatgttcttattttctt-----acattttacaataaagaatatgaaatgaactttatc |
95 |
Q |
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| T |
46927982 |
taatattgtattagaaaaggaccggagtggtatttattaaaaaatgttcttattttcttttcttacattt-acaataaagaatatgaaatgaacttaatc |
46927884 |
T |
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| Q |
96 |
caaaggtggctaaataagtataacatgatacccttggttaattaattggagggagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaa |
195 |
Q |
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| T |
46927883 |
caaaggtggctaaataagtataacatgatacccttagttaattaattggagggagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaa |
46927784 |
T |
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| Q |
196 |
tttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaagagttaacta |
263 |
Q |
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| T |
46927783 |
tttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaagagttaacta |
46927716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 11106241 - 11106353
Alignment:
| Q |
148 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaa |
247 |
Q |
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|||||||| |||||||||||||| || ||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
11106241 |
gagaggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaagctcccaa |
11106340 |
T |
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| Q |
248 |
tcaaaagagttaa |
260 |
Q |
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| T |
11106341 |
tcaaatgagttaa |
11106353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 11113205 - 11113127
Alignment:
| Q |
182 |
agagtaagtccaaatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaagagttaa |
260 |
Q |
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| T |
11113205 |
agagtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaagctcccaatcaaatgagttaa |
11113127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 46934655 - 46934586
Alignment:
| Q |
194 |
aatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaagagttaacta |
263 |
Q |
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| T |
46934655 |
aatttatcattcatgtccatatcttctggtttcatgtcaccttcaagcttccaatcaaacgagttgacta |
46934586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 13789559 - 13789628
Alignment:
| Q |
184 |
agtaagtccaaatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaa |
253 |
Q |
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||||||| |||||||||||||||||| |||||| || ||||| || ||||| |||| |||||||||||| |
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| T |
13789559 |
agtaagttcaaatttatcatccatattcatatcctcaggtttaattccaccgacaagttcccaatcaaaa |
13789628 |
T |
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