View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_2 (Length: 573)
Name: NF12670_low_2
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_2 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 363 - 560
Target Start/End: Original strand, 488239 - 488436
Alignment:
| Q |
363 |
aaatagtaaagtgattattcatgagatatattcaattcaataagtttcaacatttttcttagtttctacatatatatttagttttgacatatattgatgt |
462 |
Q |
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| T |
488239 |
aaatagtaaagtgactattcatgagatatattcaattcaataagtttcaacatttttcttagtttctacatatatatttagttttgacatatattgatgt |
488338 |
T |
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| Q |
463 |
ttaatttgtaatcagttgctagagatggtgggtgagaagtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaa |
560 |
Q |
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| T |
488339 |
ttaatttgtaatcagttgctagagatggtgggtgagaagtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaa |
488436 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 41081213 - 41081289
Alignment:
| Q |
180 |
agaagttgaaagtctagggttgaagttctaacaaggagaaaattaacatagcaactaatatattaacatttgtcact |
256 |
Q |
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| T |
41081213 |
agaagttaaaagtctagagttcaagttccattaaggagaaaactaacataacaattaaaatactaacatttgtcact |
41081289 |
T |
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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 44201 - 44268
Alignment:
| Q |
154 |
tttaagttaagggattgaatacgttgagaagttgaaagtctagggttgaagttctaacaaggagaaaa |
221 |
Q |
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| T |
44201 |
tttaagctaagagatttaatgagttgagaagttaaaagtctagggttaaagtcctaaaaaggagaaaa |
44268 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 14759803 - 14759757
Alignment:
| Q |
207 |
ctaacaaggagaaaattaacatagcaactaatatattaacatttgtc |
253 |
Q |
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| T |
14759803 |
ctaacaagaagaaaattaacataacaattaatatattaacacttgtc |
14759757 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 43848649 - 43848613
Alignment:
| Q |
215 |
gagaaaattaacatagcaactaatatattaacatttg |
251 |
Q |
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| T |
43848649 |
gagaaaattaacatagcaactaatacactaacatttg |
43848613 |
T |
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