View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_low_20 (Length: 256)

Name: NF12670_low_20
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_low_20
NF12670_low_20
[»] chr5 (13 HSPs)
chr5 (143-256)||(14724223-14724335)
chr5 (61-115)||(14724503-14724557)
chr5 (154-256)||(20351151-20351253)
chr5 (16-54)||(14724547-14724585)
chr5 (155-231)||(16985550-16985626)
chr5 (154-226)||(17237355-17237427)
chr5 (153-231)||(4852148-4852226)
chr5 (155-195)||(20174721-20174761)
chr5 (154-197)||(5584134-5584177)
chr5 (154-195)||(32295776-32295817)
chr5 (143-171)||(14724360-14724388)
chr5 (143-171)||(14724412-14724440)
chr5 (143-171)||(14724465-14724493)
[»] chr2 (4 HSPs)
chr2 (145-256)||(3981692-3981803)
chr2 (145-208)||(6742865-6742928)
chr2 (154-256)||(19933847-19933949)
chr2 (155-208)||(18076795-18076848)
[»] chr1 (8 HSPs)
chr1 (148-256)||(47142724-47142832)
chr1 (153-192)||(22069947-22069986)
chr1 (154-192)||(42132199-42132237)
chr1 (161-199)||(30939527-30939565)
chr1 (148-197)||(39637067-39637116)
chr1 (148-197)||(39645735-39645784)
chr1 (153-254)||(42312001-42312102)
chr1 (145-229)||(23264270-23264354)
[»] chr4 (5 HSPs)
chr4 (154-256)||(45421642-45421744)
chr4 (155-242)||(38836821-38836908)
chr4 (162-199)||(48026023-48026060)
chr4 (165-254)||(21485527-21485616)
chr4 (155-192)||(18570249-18570286)
[»] chr7 (3 HSPs)
chr7 (153-226)||(15026484-15026557)
chr7 (151-231)||(4648382-4648462)
chr7 (174-231)||(4648520-4648577)
[»] chr6 (4 HSPs)
chr6 (155-229)||(4084594-4084668)
chr6 (153-197)||(7072511-7072555)
chr6 (153-192)||(7644929-7644968)
chr6 (155-194)||(15610270-15610309)
[»] chr3 (9 HSPs)
chr3 (155-197)||(17058732-17058774)
chr3 (154-248)||(52585543-52585637)
chr3 (154-199)||(20685567-20685612)
chr3 (153-249)||(42595571-42595667)
chr3 (161-208)||(24592036-24592083)
chr3 (155-188)||(3856605-3856638)
chr3 (155-183)||(8727072-8727100)
chr3 (155-183)||(9078959-9078987)
chr3 (153-193)||(39452977-39453017)
[»] chr8 (2 HSPs)
chr8 (153-222)||(10260562-10260630)
chr8 (154-195)||(17834295-17834336)
[»] scaffold0015 (1 HSPs)
scaffold0015 (151-188)||(52165-52202)
[»] scaffold0006 (1 HSPs)
scaffold0006 (155-211)||(203100-203156)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 14724335 - 14724223
Alignment:
Q  143 aaagaaatagacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccacctta 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  14724335 aaagaaatagacttatagcatttcattatttaaaatgtgttcaatataatctggtatgttaaccaatatatcgaaactaactgataat-aagccgcctta 14724237  T
Q  243 gttaattcatgggc 256  Q
    ||||||||||||||    
T  14724236 gttaattcatgggc 14724223  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 14724557 - 14724503
Alignment:
Q  61 ccaatgcaaattatagcatgatgtctttttgtagtccatagttatattttagtaa 115  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  14724557 ccaatacatattatagcatgatgtctttttgtagtccatagttatattttagtaa 14724503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 20351151 - 20351253
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaattcatg 253  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||    ||||||| |||| ||||||||| |||||||  ||| |||| | |||||||||    
T  20351151 cttatagcatatcattaattaaaatgtgttcaatacaatgtggtggcgtaaccaaaatatggaaactagccgataatgtggccgcctttgctaattcatg 20351250  T
Q  254 ggc 256  Q
    |||    
T  20351251 ggc 20351253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 14724585 - 14724547
Alignment:
Q  16 ctatcaatcgatatataagtaggactaaccaatacatat 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14724585 ctatcaatcgatatataagtaggactaaccaatacatat 14724547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 16985626 - 16985550
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatg 231  Q
    |||||||||||||||| | ||||| ||||||||||||| |||||| ||||| ||||| |  ||||||||| ||||||    
T  16985626 ttatagcatttcattaatcaaaatatgttcaatacaatttggtatattaactaatatctaaaaactagctaataatg 16985550  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 17237355 - 17237427
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctga 226  Q
    |||||| |||||||||| ||||||||||||||||| |||||||||| |  ||||| || | ||||||||||||    
T  17237355 cttatatcatttcattacttaaaatgtgttcaatataatctggtatttataccaaaatctggaaactagctga 17237427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 4852148 - 4852226
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatg 231  Q
    ||||||| |||||||||| | ||||||||||||||||||| || ||||| |||||| | ||  ||| ||||||||||||    
T  4852148 acttataacatttcattaatcaaaatgtgttcaatacaatttgatatgtcaaccaaaacatgaaaattagctgataatg 4852226  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 20174761 - 20174721
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctg 195  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  20174761 ttataacatttcattacttaaaatgtgttcaatacaatctg 20174721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 5584177 - 5584134
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggt 197  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||    
T  5584177 cttatagcatatcattaattaaaatgtgttcaatacaatgtggt 5584134  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 32295776 - 32295817
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctg 195  Q
    |||||| |||||||||| | ||||||||||||||||||||||    
T  32295776 cttatatcatttcattactaaaaatgtgttcaatacaatctg 32295817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 14724388 - 14724360
Alignment:
Q  143 aaagaaatagacttatagcatttcattat 171  Q
    |||||||||||||||||||||||||||||    
T  14724388 aaagaaatagacttatagcatttcattat 14724360  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 14724440 - 14724412
Alignment:
Q  143 aaagaaatagacttatagcatttcattat 171  Q
    |||||||||||||||||||||||||||||    
T  14724440 aaagaaatagacttatagcatttcattat 14724412  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 14724493 - 14724465
Alignment:
Q  143 aaagaaatagacttatagcatttcattat 171  Q
    |||||||||||||||||||||||||||||    
T  14724493 aaagaaatagacttatagcatttcattat 14724465  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 3981692 - 3981803
Alignment:
Q  145 agaaatagacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagt 244  Q
    |||||||  ||||||||||||||||| | ||||||||||||||||| |||||||| |||||||  || | ||||||||||||| |||| ||| ||||||     
T  3981692 agaaataagcttatagcatttcattaatcaaaatgtgttcaatacattctggtatattaaccagaatctggaaactagctgatgatgaggccgccttagc 3981791  T
Q  245 taattcatgggc 256  Q
    ||||||||||||    
T  3981792 taattcatgggc 3981803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 6742865 - 6742928
Alignment:
Q  145 agaaatagacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaa 208  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||    
T  6742865 agaaataaacttatagcatttcattaattaagatgtgttcaatacaatttagtatattaaccaa 6742928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 19933847 - 19933949
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaattcatg 253  Q
    |||||| ||| |||||| ||||||||||||||||||||| ||||    ||||||| |||| ||||||||| |||||||  ||  |||| | |||||||||    
T  19933847 cttataacatatcattaattaaaatgtgttcaatacaatgtggtggcgtaaccaaaatatggaaactagccgataatgtggcagcctttgctaattcatg 19933946  T
Q  254 ggc 256  Q
    |||    
T  19933947 ggc 19933949  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 18076795 - 18076848
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaa 208  Q
    |||||| ||||||||| ||||| ||||||||||||||| |||||| | ||||||    
T  18076795 ttatagtatttcattacttaaagtgtgttcaatacaatatggtatttcaaccaa 18076848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 47142832 - 47142724
Alignment:
Q  148 aatagacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaa 247  Q
    |||| ||||||| |||||||||| | ||||||||||||||||| |||||||| |||||||  || | ||||||||||||| |||| |||  ||||| |||    
T  47142832 aataaacttataacatttcattaatcaaaatgtgttcaatacattctggtatattaaccagaatctggaaactagctgatgatgaggccgacttagctaa 47142733  T
Q  248 ttcatgggc 256  Q
    |||||||||    
T  47142732 ttcatgggc 47142724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 22069986 - 22069947
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaat 192  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22069986 acttatagcatttcattatttaaaatgtgttcaatacaat 22069947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 42132237 - 42132199
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaat 192  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  42132237 cttatatcatttcattatttaaaatgtgttcaatacaat 42132199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 30939527 - 30939565
Alignment:
Q  161 catttcattatttaaaatgtgttcaatacaatctggtat 199  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  30939527 catttcattacttaaaacgtgttcaatacaatctggtat 30939565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 39637116 - 39637067
Alignment:
Q  148 aatagacttatagcatttcattatttaaaatgtgttcaatacaatctggt 197  Q
    |||| |||||| ||||||||||| | ||||||||||||||||||| ||||    
T  39637116 aataaacttattgcatttcattactcaaaatgtgttcaatacaatgtggt 39637067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 39645784 - 39645735
Alignment:
Q  148 aatagacttatagcatttcattatttaaaatgtgttcaatacaatctggt 197  Q
    |||| |||||| ||||||||||| | ||||||||||||||||||| ||||    
T  39645784 aataaacttattgcatttcattactcaaaatgtgttcaatacaatgtggt 39645735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 42312102 - 42312001
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaattcat 252  Q
    |||||||| || |||||| ||||||||||||||||||||| ||||    ||||||| |||| |||||||   |||||||  ||| |||| | ||||||||    
T  42312102 acttatagaatatcattaattaaaatgtgttcaatacaatgtggtggcataaccaaaatatggaaactaatcgataatgtggccgcctttgctaattcat 42312003  T
Q  253 gg 254  Q
    ||    
T  42312002 gg 42312001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 23264270 - 23264354
Alignment:
Q  145 agaaatagacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataa 229  Q
    ||||||| | |||||||||||||||  | || |||||||||||||||| || ||| || |||| ||| | | |||||||||||||    
T  23264270 agaaataaagttatagcatttcattcatcaatatgtgttcaatacaatatgatatttttaccactatttgggaactagctgataa 23264354  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 45421744 - 45421642
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaattcatg 253  Q
    |||||| |||||||||| | ||||||||||||||||| | |||||| |||||||  || | ||||||| ||||| |||| ||| |||||| |||||||||    
T  45421744 cttataacatttcattaatcaaaatgtgttcaatacattatggtatattaaccagaatctggaaactaactgatgatgaggccgccttagctaattcatg 45421645  T
Q  254 ggc 256  Q
    |||    
T  45421644 ggc 45421642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 38836908 - 38836821
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccacctta 242  Q
    ||||| |||||||||| | ||||||||||||||||| ||| |||| |||||||| || | |||| |||||||| |||| ||| |||||    
T  38836908 ttataacatttcattaatcaaaatgtgttcaatacattctagtatattaaccaaaatctagaaattagctgattatgaggccgcctta 38836821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 48026023 - 48026060
Alignment:
Q  162 atttcattatttaaaatgtgttcaatacaatctggtat 199  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48026023 atttcattacttaaaatgtgttcaatacaatctggtat 48026060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 21485527 - 21485616
Alignment:
Q  165 tcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcg-aaactagctgataatgaagccaccttagttaattcatgg 254  Q
    |||||| ||||||| ||||||||||||| |||||||| || ||| || ||| ||||||||||||||||   || |||||| ||||||||||    
T  21485527 tcattacttaaaatatgttcaatacaatttggtatgtcaatcaaaat-tcgaaaactagctgataatgtgaccgccttagctaattcatgg 21485616  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 18570249 - 18570286
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaat 192  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  18570249 ttataacatttcattattttaaatgtgttcaatacaat 18570286  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 15026557 - 15026484
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctga 226  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |  ||||| || | ||||||||||||    
T  15026557 acttatatcatttcattacttaaaatgtgttcaatacaatctggtatttctaccaaaatctggaaactagctga 15026484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 4648382 - 4648462
Alignment:
Q  151 agacttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatg 231  Q
    ||||||| | |||||||||| | ||||| ||||||||||||| || ||||||||| ||| | | |||||||||||||||||    
T  4648382 agacttacaacatttcattaatcaaaatatgttcaatacaatttgatatgttaactaatttctggaaactagctgataatg 4648462  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 4648520 - 4648577
Alignment:
Q  174 aaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatg 231  Q
    ||||| ||||||||||||| |||| |||||||||||||||  ||||||  ||||||||    
T  4648520 aaaatatgttcaatacaatttggtttgttaaccaatatatgaaaactaagtgataatg 4648577  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 4084668 - 4084594
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataa 229  Q
    |||| ||||||||||  | ||||||||||||||||||| |||||| |  |||||||| | |||||||||||||||    
T  4084668 ttattgcatttcattcatcaaaatgtgttcaatacaatatggtatttctaccaatatttggaaactagctgataa 4084594  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 7072511 - 7072555
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggt 197  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||    
T  7072511 acttataacatttcattatttaaaatgtgtttaatacaatttggt 7072555  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 7644929 - 7644968
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaat 192  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  7644929 acttatagcattttattacttaaaatgtgttcaatacaat 7644968  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 15610309 - 15610270
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatct 194  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  15610309 ttatatcatttcattacttaaaatgtgttcaatacaatct 15610270  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 17058732 - 17058774
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggt 197  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  17058732 ttatagcatttcattacttaaaatgtgttcaatacaatttggt 17058774  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 52585543 - 52585637
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaat 248  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||| |  ||||| || | ||||||||||||  |||  ||| |||||||||||    
T  52585543 cttatatcatttcattacttaaaatgtgttcaatacaatccgatatttctaccaaaatctggaaactagctgaggatgtggccgccttagttaat 52585637  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 20685612 - 20685567
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctggtat 199  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||    
T  20685612 cttatatcatttcgatatttaaaatgtgttcaatacaatctggtat 20685567  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 42595571 - 42595667
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactagctgataatgaagccaccttagttaatt 249  Q
    |||| ||||||||| ||| ||||||||| ||||||||| || ||||| ||||| || || |  |||||| |||||||||  ||| ||||||||||||    
T  42595571 acttgtagcatttcgttacttaaaatgtcttcaatacattccggtattttaacaaaaatctgaaaactaactgataatgtggccgccttagttaatt 42595667  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 24592036 - 24592083
Alignment:
Q  161 catttcattatttaaaatgtgttcaatacaatctggtatgttaaccaa 208  Q
    |||||||||| |  |||||||||||||||||| |||||||||||||||    
T  24592036 catttcattagtcgaaatgtgttcaatacaatttggtatgttaaccaa 24592083  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 3856605 - 3856638
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaata 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  3856605 ttataacatttcattatttaaaatgtgttcaata 3856638  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 8727100 - 8727072
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgtt 183  Q
    |||||||||||||||||||||||||||||    
T  8727100 ttatagcatttcattatttaaaatgtgtt 8727072  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 9078987 - 9078959
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgtt 183  Q
    |||||||||||||||||||||||||||||    
T  9078987 ttatagcatttcattatttaaaatgtgtt 9078959  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 39452977 - 39453017
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatc 193  Q
    ||||||| ||||| |||||||||||||||| ||||||||||    
T  39452977 acttatatcattttattatttaaaatgtgtccaatacaatc 39453017  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 10260630 - 10260562
Alignment:
Q  153 acttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatatatcgaaactag 222  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||| || ||||| || | ||||||||    
T  10260630 acttatatcatttcattacttaaaa-gtgttcaatacaatctggtatttttaccaaaatctagaaactag 10260562  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 17834295 - 17834336
Alignment:
Q  154 cttatagcatttcattatttaaaatgtgttcaatacaatctg 195  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  17834295 cttatatcatttcattacttaaaatgtgttcaatacattctg 17834336  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 52165 - 52202
Alignment:
Q  151 agacttatagcatttcattatttaaaatgtgttcaata 188  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  52165 agacttatagcatatcattacttaaaatgtgttcaata 52202  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 203100 - 203156
Alignment:
Q  155 ttatagcatttcattatttaaaatgtgttcaatacaatctggtatgttaaccaatat 211  Q
    |||| |||||||||||   || |||||||||||||||| ||||||| ||||||||||    
T  203100 ttattgcatttcattaaacaagatgtgttcaatacaatttggtatggtaaccaatat 203156  T

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