View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_low_22 (Length: 235)

Name: NF12670_low_22
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_low_22
NF12670_low_22
[»] chr4 (12 HSPs)
chr4 (1-224)||(23868897-23869120)
chr4 (1-111)||(24307388-24307498)
chr4 (1-113)||(23453373-23453485)
chr4 (1-111)||(23885992-23886102)
chr4 (1-110)||(23415713-23415822)
chr4 (1-111)||(23402239-23402349)
chr4 (1-110)||(23408544-23408653)
chr4 (1-111)||(26434189-26434299)
chr4 (1-111)||(26832900-26833010)
chr4 (1-111)||(26435969-26436079)
chr4 (2-111)||(34662044-34662153)
chr4 (1-58)||(23451788-23451845)
[»] chr7 (2 HSPs)
chr7 (1-108)||(47317447-47317554)
chr7 (2-75)||(40180309-40180382)
[»] chr1 (3 HSPs)
chr1 (1-108)||(33216610-33216717)
chr1 (32-111)||(45576399-45576478)
chr1 (35-87)||(29391665-29391717)
[»] chr2 (1 HSPs)
chr2 (20-72)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23868897 - 23869120
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23868897 cacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcact 23868996  T
Q  101 agttcttagatctaagataatttcgttgacttttgtgggatttatttgcttggtttgatgttactttatctgatcttaggaactcttagatattttaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23868997 agttcttagatctaagataatttcgttgacttttgtgggatttatttgcttggtttgatgttactttatctgatcttaggaactcttagatattttaaat 23869096  T
Q  201 ttttgctttcgaatttgcagtgaa 224  Q
    ||||||||||||||||| ||||||    
T  23869097 ttttgctttcgaatttgtagtgaa 23869120  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24307388 - 24307498
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||    
T  24307388 cacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcact 24307487  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  24307488 agttcttagat 24307498  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 23453485 - 23453373
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||    
T  23453485 cacttcaagggaaattcagactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttact 23453386  T
Q  101 agttcttagatct 113  Q
    |||||||||||||    
T  23453385 agttcttagatct 23453373  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23885992 - 23886102
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||    
T  23885992 cacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttact 23886091  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  23886092 agttcttagat 23886102  T

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Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23415822 - 23415713
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| |||    
T  23415822 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttact 23415723  T
Q  101 agttcttaga 110  Q
    || |||||||    
T  23415722 agctcttaga 23415713  T

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Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23402239 - 23402349
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| |||    
T  23402239 cacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttact 23402338  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  23402339 agttcttagat 23402349  T

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Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23408653 - 23408544
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| |||    
T  23408653 cacttcaagggaaattcagaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttact 23408554  T
Q  101 agttcttaga 110  Q
    || |||||||    
T  23408553 agctcttaga 23408544  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26434189 - 26434299
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    ||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||    
T  26434189 cacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttact 26434288  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  26434289 agttcttagat 26434299  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26832900 - 26833010
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    ||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||    
T  26832900 cacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttact 26832999  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  26833000 agttcttagat 26833010  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26435969 - 26436079
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    ||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| ||     
T  26435969 cacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttacc 26436068  T
Q  101 agttcttagat 111  Q
    |||||||||||    
T  26436069 agttcttagat 26436079  T

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Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 34662153 - 34662044
Alignment:
Q  2 acttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcacta 101  Q
    ||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || |    
T  34662153 acttcgagggaaattcagactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaa 34662054  T
Q  102 gttcttagat 111  Q
    ||||||||||    
T  34662053 gttcttagat 34662044  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23451845 - 23451788
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaag 58  Q
    ||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||    
T  23451845 cacttcaagggaaattcagaccgcagtcaggcttgttctgcccggtgaattggccaag 23451788  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 47317447 - 47317554
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || || ||||||||||| ||||| |||    
T  47317447 cacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttact 47317546  T
Q  101 agttctta 108  Q
    ||||||||    
T  47317547 agttctta 47317554  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 40180382 - 40180309
Alignment:
Q  2 acttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaagg 75  Q
    ||||| ||||| ||||| ||||| || ||| | ||||||||||| |||||||| || |||||||||||||||||    
T  40180382 acttctagggagattcaaactgctgttagattggttcttcctggagaattggctaaacatgctgtttctgaagg 40180309  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33216610 - 33216717
Alignment:
Q  1 cacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcact 100  Q
    |||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || |||||||| ||||| |||    
T  33216610 cacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttact 33216709  T
Q  101 agttctta 108  Q
     |||||||    
T  33216710 ggttctta 33216717  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 45576399 - 45576478
Alignment:
Q  32 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 111  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || || ||||||||||| || ||||| || ||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagat 45576478  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 29391665 - 29391717
Alignment:
Q  35 gttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgt 87  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  20 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 72  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

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