View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_23 (Length: 221)
Name: NF12670_low_23
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 32821554 - 32821771
Alignment:
| Q |
4 |
ttcttaagttttataaacagtaaacgtgcatgtcatatctctagacaatgtgtaactaaatccaccctatatccaacacaatgaagatgttggaagctgc |
103 |
Q |
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| T |
32821554 |
ttctcaagttttataaacagtaagcgtgcatgtcatatctctagacaatgtgtaactaaatccaccctatatccaacacagtgaagatgttggaagctgc |
32821653 |
T |
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| Q |
104 |
aattacaatgaagacaatccaaatgccacaatataaggcggtcagaggaaaaccaaatcaaggtggaatttccgacataactatatgacccatccattgt |
203 |
Q |
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| T |
32821654 |
aattgcaatgaagacaatcaaaatgccacaatataaggcggtcagaggaaaaccaaatcaaggtggaatttccgacataaatatatgacccatccattgt |
32821753 |
T |
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| Q |
204 |
ttgaatggaaacaaaact |
221 |
Q |
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| T |
32821754 |
ttgaatggaaacaaaact |
32821771 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 31973507 - 31973579
Alignment:
| Q |
37 |
catatctctagacaatgtgtaactaaatccaccct---atatccaacacaatgaagatgttggaagctgcaat |
106 |
Q |
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| T |
31973507 |
catatctctagacaatgtgggactaaatccaccctttcacacccaacacaatgaaggtgttggaggctgcaat |
31973579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 26642623 - 26642585
Alignment:
| Q |
32 |
catgtcatatctctagacaatgtgtaactaaatccaccc |
70 |
Q |
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| T |
26642623 |
catgtcatatctctaggcaatgtggaactaaatccaccc |
26642585 |
T |
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