View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_3 (Length: 544)
Name: NF12670_low_3
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 17990163 - 17989640
Alignment:
| Q |
1 |
gcactttaaacctatgaagcacatagatagacacgaccctgacacatcaacactagtagattgtccaattagattccagcataaagtcctgaaaagtaga |
100 |
Q |
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| T |
17990163 |
gcactttaaacctatgaagcacatagatagacacgaccctgacacatcaacactagtagattgtccaattagattccagcataaagtcctgaaaagtaga |
17990064 |
T |
|
| Q |
101 |
atgaatacaatgttagagagatcccttatataaataacatgacctaaaagtaacatctttctttcgctcctaacttgaaaggatatgacaaagttctaaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17990063 |
atgaataccatgttagagagatcccttatataaataacatgacctaaaagtaacatctttctttcgctcctaacttgaaaggatatgacaa-gttctaaa |
17989965 |
T |
|
| Q |
201 |
tttttcatcaatacccttcagaagcatatatgtgttttaaaagtaacataattttgtctcttctcatattcaaacccataaaactaagggatggaaaaga |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
17989964 |
attttcatcaatacccttcagaagcatat--gtgttttaaaagtaacataattttgtctcttctcatattcaaacccatcaaactaagggaaggaaaaga |
17989867 |
T |
|
| Q |
301 |
aaacactttctttactcttcaaacaaagcaaacataaagattcatcaagcattaggttgaacaaaaaagaaggggaaaaggaaattgaacagatttaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
17989866 |
aaacactttctttactcttcaaacaaagcaaacataaagattcatcaagcattaggttgaataaaaaagaaggcgaaaaggaaattgaacagatttaaat |
17989767 |
T |
|
| Q |
401 |
actcaccaatatggtttagtatggaagcaatgatgggcaataatgaattgagaatacatgattaaggtatggtgcatgttagaatatttcatattaacat |
500 |
Q |
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| T |
17989766 |
actcaacaatatggtttagtatggaagcaattatggggaataatgaattgagaatgcatgattaaggtatggtccatattacaatatttcatattagcat |
17989667 |
T |
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| Q |
501 |
ctagaaaagtttttatttgtcgaaact |
527 |
Q |
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| T |
17989666 |
ctagaaaagtttttatttgtcgaaact |
17989640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17990470 - 17990437
Alignment:
| Q |
1 |
gcactttaaacctatgaagcacatagatagacac |
34 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
17990470 |
gcacttcaaacctatgaagcacatagatagacac |
17990437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 9750013 - 9750058
Alignment:
| Q |
420 |
tatggaag-caatgatgggcaataatgaattgagaatacatgatta |
464 |
Q |
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| T |
9750013 |
tatggaagtcaatgaagggcaataatgaattgagaatacatgatta |
9750058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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