View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12670_low_4 (Length: 491)
Name: NF12670_low_4
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12670_low_4 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 22080119 - 22079661
Alignment:
| Q |
18 |
actatatccaacaatgttcttttagttccaacatttcttgatgtagtcttagtgatgtgattccctattactattgttgttgataannnnnnnnnc--cc |
115 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
22080119 |
actatatccaaca-tgttcttttagttccaacattttttgatgtagtcttagtgatgtgattccctattactattgctgttgataaaaaactttttttcc |
22080021 |
T |
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| Q |
116 |
agcaacaatggctagacctttgcaaaagatcaagaacatcaatgattccaaatctctgtggaaaattgctattcgagttgttgacatgtggactgttgca |
215 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22080020 |
agcaacaatggccaggcctttgcaaaagatcaagaacatcaatgatttcaaatctctgtggaaaattgctgttcgagttgttgacatgtggactgttgca |
22079921 |
T |
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| Q |
216 |
aattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtggggttcaaagcacatatcaatgatggttacaacatcactgatctataat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22079920 |
aattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtgggtttcaaagcacatatcaatgatggttacaacatcactcatctataat |
22079821 |
T |
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| Q |
316 |
taattttaatagaaactaatgttttaaaaagtatgtataattcactcctaatttccatcagggtgatcgtattcaaataattctgccatctgaactcaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
22079820 |
taattttaatagaaactaatgttttaaaaagtatgtataattcacttctaatttccatcaggttgatcgtattcaaataattctgccatttgaactcaaa |
22079721 |
T |
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| Q |
416 |
gataagtttaagggtataattgctgagaacactacctttactctgcaaaactttgatgtc |
475 |
Q |
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| T |
22079720 |
gatcagtttaagggtagaattgttgagaacactacctttactctgcaaaactttgatgtc |
22079661 |
T |
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Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 119 - 320
Target Start/End: Original strand, 1522538 - 1522736
Alignment:
| Q |
119 |
aacaatggctagacctttgcaaaagatcaagaacatcaatgattccaaatctctgtggaaaattgctattcgagttgttgacatgtggactgttgcaaat |
218 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||| |
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| T |
1522538 |
aacaatggctaggcctttgcaaaagatcaagaacctcaatgattccaaatccctg--gaaaattgttgttcgagttgttgacatgtggactgttgcaaat |
1522635 |
T |
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| Q |
219 |
tcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtggggttcaaagcacatatcaatgatggttacaacatcactgatctataattaa |
318 |
Q |
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| T |
1522636 |
tcaaagaagaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttgaaagcactcaactatg-tggttacaacatcactaatctatatttaa |
1522734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 265
Target Start/End: Complemental strand, 23700321 - 23700170
Alignment:
| Q |
114 |
ccagcaacaatggctagacctttgcaaaagatcaagaacatcaatgattccaaatctctgtggaaaattgctattcgagttgttgacatgtggactgttg |
213 |
Q |
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||||||||||||||||| |||||| |||| ||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
23700321 |
ccagcaacaatggctaggcctttggaaaaaatcaagaacctcaatggttccaaatctctgtggaaaattgatgttcgagttgttgatttgtggactgtta |
23700222 |
T |
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| Q |
214 |
caaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggt |
265 |
Q |
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| T |
23700221 |
ctaattcaaagagcaaacaacatattgagatggtgttgtgtgacaaagaggt |
23700170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 23700060 - 23699962
Alignment:
| Q |
373 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagataagtttaagggtataattgctgagaacactacctttactctgcaaaactttga |
471 |
Q |
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| T |
23700060 |
tcagggtgatcgaattcaagtaattttgccaactgaattcaaagataagtttaagagtagaattgctgagaacgctactttcactctgcaagactttga |
23699962 |
T |
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Target: scaffold0028 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 125156 - 125005
Alignment:
| Q |
115 |
cagcaacaatggctagacctttgcaaaagatcaagaacatcaatgattccaaatctctgtggaaaattgctattcgagttgttgacatgtggactgttgc |
214 |
Q |
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|||||||||||||||| ||||| ||||| || || | | |||||||||| |||||| |||||||||||||| ||||||||||||| | |||||||||| |
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| T |
125156 |
cagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttgg |
125057 |
T |
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| Q |
215 |
aaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtg |
266 |
Q |
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| T |
125056 |
aaattcaaagaacaaacaacatattgagatggtggggtgcgacaaagaggtg |
125005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 373 - 474
Target Start/End: Complemental strand, 124897 - 124796
Alignment:
| Q |
373 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagataagtttaagggtataattgctgagaacactacctttactctgcaaaactttgat |
472 |
Q |
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||||||||||||||||||| | ||| ||||| |||| |||||||| |||||||| ||| | |||||||||||||||| ||||||||||||||||||||| |
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| T |
124897 |
tcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaactttgat |
124798 |
T |
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| Q |
473 |
gt |
474 |
Q |
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|| |
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| T |
124797 |
gt |
124796 |
T |
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