View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12670_low_5 (Length: 487)

Name: NF12670_low_5
Description: NF12670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12670_low_5
NF12670_low_5
[»] chr1 (3 HSPs)
chr1 (1-398)||(2557729-2558127)
chr1 (442-472)||(2557680-2557710)
chr1 (178-211)||(12891612-12891645)
[»] chr6 (4 HSPs)
chr6 (178-258)||(16477090-16477171)
chr6 (178-258)||(18860023-18860104)
chr6 (178-232)||(1786902-1786956)
chr6 (178-258)||(15052321-15052402)
[»] chr5 (3 HSPs)
chr5 (178-258)||(21825739-21825820)
chr5 (178-258)||(25904735-25904816)
chr5 (204-258)||(3153513-3153569)
[»] chr4 (41 HSPs)
chr4 (182-258)||(12182065-12182142)
chr4 (182-249)||(12180491-12180558)
chr4 (178-285)||(12184628-12184737)
chr4 (160-258)||(12177327-12177425)
chr4 (178-258)||(12170071-12170152)
chr4 (160-237)||(12189626-12189702)
chr4 (160-232)||(12178907-12178978)
chr4 (178-246)||(12180825-12180893)
chr4 (160-232)||(12184291-12184362)
chr4 (160-258)||(12189282-12189380)
chr4 (182-258)||(12174133-12174210)
chr4 (182-258)||(12178585-12178662)
chr4 (182-258)||(12183968-12184045)
chr4 (160-232)||(12182387-12182458)
chr4 (160-258)||(12184953-12185051)
chr4 (160-258)||(12185297-12185395)
chr4 (160-258)||(12186945-12187043)
chr4 (160-258)||(12187289-12187387)
chr4 (178-244)||(12169482-12169548)
chr4 (178-232)||(12172454-12172508)
chr4 (185-258)||(12172786-12172860)
chr4 (184-246)||(12173453-12173515)
chr4 (181-258)||(12174798-12174876)
chr4 (178-227)||(12169167-12169216)
chr4 (181-246)||(12182731-12182796)
chr4 (178-258)||(12188956-12189037)
chr4 (181-245)||(12169779-12169843)
chr4 (160-232)||(12173103-12173174)
chr4 (160-259)||(12186602-12186701)
chr4 (160-259)||(12188596-12188695)
chr4 (182-245)||(12173792-12173855)
chr4 (180-245)||(12170661-12170726)
chr4 (182-258)||(12175142-12175218)
chr4 (181-246)||(12179251-12179316)
chr4 (160-232)||(12174453-12174524)
chr4 (180-258)||(12170367-12170446)
chr4 (173-257)||(4374977-4375062)
chr4 (160-242)||(12176984-12177067)
chr4 (200-271)||(12186297-12186370)
chr4 (200-271)||(12188291-12188364)
chr4 (160-227)||(12170986-12171052)
[»] chr2 (52 HSPs)
chr2 (178-258)||(24621697-24621778)
chr2 (178-258)||(24622016-24622097)
chr2 (178-258)||(24622335-24622416)
chr2 (178-258)||(24622619-24622700)
chr2 (178-258)||(24622903-24622984)
chr2 (178-258)||(24623506-24623587)
chr2 (178-258)||(24623825-24623906)
chr2 (178-258)||(24624418-24624499)
chr2 (178-258)||(24624737-24624818)
chr2 (178-258)||(24625021-24625102)
chr2 (178-258)||(24625340-24625421)
chr2 (178-258)||(24626913-24626994)
chr2 (178-258)||(24631399-24631480)
chr2 (178-258)||(24631718-24631799)
chr2 (178-258)||(24632002-24632083)
chr2 (178-258)||(24632286-24632367)
chr2 (178-258)||(24632605-24632686)
chr2 (178-258)||(24632889-24632970)
chr2 (178-258)||(24633173-24633254)
chr2 (178-258)||(24633492-24633573)
chr2 (178-258)||(24633811-24633892)
chr2 (178-258)||(24634095-24634176)
chr2 (178-258)||(24634698-24634779)
chr2 (178-258)||(24638777-24638858)
chr2 (178-258)||(24639096-24639177)
chr2 (178-258)||(24623222-24623303)
chr2 (178-258)||(24627232-24627313)
chr2 (178-258)||(24627516-24627597)
chr2 (178-258)||(24631115-24631196)
chr2 (178-258)||(3348064-3348145)
chr2 (178-258)||(24625982-24626063)
chr2 (178-258)||(24634414-24634495)
chr2 (178-258)||(24638458-24638539)
chr2 (178-230)||(24626302-24626354)
chr2 (178-258)||(24620764-24620848)
chr2 (178-246)||(24619616-24619687)
chr2 (178-258)||(24621086-24621171)
chr2 (178-258)||(24621409-24621494)
chr2 (178-258)||(24625659-24625744)
chr2 (178-258)||(24626625-24626710)
chr2 (178-258)||(24635569-24635654)
chr2 (178-258)||(24636270-24636355)
chr2 (178-258)||(24636593-24636678)
chr2 (178-258)||(24637518-24637603)
chr2 (178-230)||(24637841-24637893)
chr2 (178-258)||(24639445-24639530)
chr2 (178-258)||(24639768-24639853)
chr2 (178-258)||(24640091-24640176)
chr2 (178-258)||(24635246-24635331)
chr2 (178-258)||(24636916-24637001)
chr2 (204-258)||(24630857-24630912)
chr2 (198-248)||(38802330-38802380)
[»] scaffold1024 (1 HSPs)
scaffold1024 (178-258)||(27-108)
[»] chr3 (4 HSPs)
chr3 (178-232)||(14903159-14903213)
chr3 (182-258)||(16990067-16990144)
chr3 (178-246)||(3732693-3732761)
chr3 (177-245)||(30729417-30729485)
[»] chr8 (3 HSPs)
chr8 (179-226)||(13642504-13642551)
chr8 (179-226)||(13742916-13742963)
chr8 (178-225)||(15246341-15246388)
[»] chr7 (1 HSPs)
chr7 (198-258)||(44836736-44836797)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 2558127 - 2557729
Alignment:
Q  1 gatatcaagtaaagatgcaaaagcataacaaatcaaatatgaatgtaatnnnnnnnnccaaatgcaaacaaaggaccgtcatttatacccatgttttcaa 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||          ||||||||||||||||||| |||| |||||||||||| |||    
T  2558127 gatatcaagtaaagatacaaaagcagaacaaatcaaatatgaatgtaataaaaaaata-aaatgcaaacaaaggaccgccattgatacccatgtttacaa 2558029  T
Q  101 ttccgaaagacattttccccttctttaaataaaaaga-tagtgtagaaacatcacatggcaaaaaat--ggagggatgaagtgcaacacaaggacttccc 197  Q
    | ||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  2558028 tcccgaaagacattttccc-ttctataaataaaaagaataatgtagaaacatcacatggcaaaaaaataggagggatgaagtgcaacacaaggacttccc 2557930  T
Q  198 aggaggtcacccatcctagtactactctcggccaaacacgcttaactgcagattctgatggatctagtgcattactacttctatgatcattgaactaaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2557929 aggaggtcacccatcctagtactactctcggccaaacacgcttaactgcagattctgatggatctagtgcattactacttctatgatcgttgaactaaac 2557830  T
Q  298 tgagcttnnnnnnnnttatcttttctactctaagaagtaacaaatacaagatttcaaacaatcatgtcacgcatgtctagcacctgaactcaaatcctat 397  Q
    ||||  |         ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  2557829 tgagacttaaaaaaactatcttttccactctaagaagtaacaaatacaagatttcaaacaatcatgtcaagcatgtctagcccctgaactcaaatcctat 2557730  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 472
Target Start/End: Complemental strand, 2557710 - 2557680
Alignment:
Q  442 gaattttttaagcaattgagaggcccattat 472  Q
    |||||||||||||||||||||||||||||||    
T  2557710 gaattttttaagcaattgagaggcccattat 2557680  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 12891612 - 12891645
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat 211  Q
    |||||||||||||||||||||| |||||||||||    
T  12891612 gtgcaacacaaggacttcccagaaggtcacccat 12891645  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 16477090 - 16477171
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||    
T  16477090 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttgactgcagagttctgatgg 16477171  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 18860104 - 18860023
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  18860104 gtgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcagagttctgatgg 18860023  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 1786902 - 1786956
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||||| ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  1786902 gtgcaacacaaagacttaccagaaggtcacccatcctaatactactctcgtccaa 1786956  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 15052402 - 15052321
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||| ||||| || ||| ||| |||| ||||||| | | ||| ||||||||| ||||||||||| |||||||||    
T  15052402 gtgcaacacaagaacttctcatgagatcatccattctagtaccattttcgtccaaacacgtttaactgcagagttctgatgg 15052321  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 21825820 - 21825739
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||    
T  21825820 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttgactgcagagttctgatgg 21825739  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 25904735 - 25904816
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||| |||  |||||| ||||| || ||||||||||| ||||| |||||||||||| || |||||||||    
T  25904735 gtgcaacacaaggactttccaaaaggtcatccatcttaatactactctcgtccaaatacgcttaactgcggagttctgatgg 25904816  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 3153513 - 3153569
Alignment:
Q  204 tcacccatccta-gtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||| |||||||||||| |||| ||||||||||||| || |||||||||    
T  3153513 tcacccatcctaagtactactctcgcccaagcacgcttaactgcggagttctgatgg 3153569  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12182065 - 12182142
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  12182065 aacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcagagttctgatgg 12182142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 12180491 - 12180558
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  12180491 aacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcaga 12180558  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 12184628 - 12184737
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctga-tggatctagtgcattactac 275  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||| || |||||| ||||||  |||||||| |||    
T  12184628 gtgcaacacaaggactttccaggaggtcacccatcctggtactactctcgcccaagcacgcttaactgcggagttctgattggatccggtgcattagtac 12184727  T
Q  276 ttctatgatc 285  Q
    || |||||||    
T  12184728 ttgtatgatc 12184737  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12177327 - 12177425
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || |||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  12177327 aaaaaatggtggga-gaggtgcaatacaaggacttcccaggtggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 12177425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 12170071 - 12170152
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| || | |||||||||||||||| |||||||||    
T  12170071 gtgcaacacaaggacttcccaagaggtcacccatcatagtactactctcgccctagcacgcttaactgcagagttctgatgg 12170152  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 12189626 - 12189702
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacg 237  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  12189626 aaaaaatggtggga-gaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacg 12189702  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12178907 - 12178978
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12178907 aaaaaatggtggga-gaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaa 12178978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 12180825 - 12180893
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgc 246  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  12180825 gtgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaagaacgcttaactgc 12180893  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12184291 - 12184362
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12184291 aaaaaatggtggga-gaggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaa 12184362  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12189282 - 12189380
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||  |||||||| || |||||||||    
T  12189282 aaaaaatggtggga-gaggtgcaacacaaggacttcccaggaggtcatccatcctagtactactctcgcccaagcacaattaactgcggagttctgatgg 12189380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12174133 - 12174210
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  12174133 aacacaaggactttccaggaggtcatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 12174210  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12178585 - 12178662
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||| || |||||||||    
T  12178585 aacacaaggacttcccaggaggacacccatcatagtactactctcgcccaagcacgcttaactgcggagttctgatgg 12178662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12183968 - 12184045
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||| || |||||||||    
T  12183968 aacacaaggacttccaaggaggtcacccatcctagtactactctcgtccaagcacgcgtaactgcggagttctgatgg 12184045  T

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Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12182387 - 12182458
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  12182387 aaaaaatggtggga-gaggtgcaacacaaggacttcccaggaggtcacccatcctagtcctactctcgcccaa 12182458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12184953 - 12185051
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || |||||||| |||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| || |||||||||    
T  12184953 aaaaaatggtggga-gaggtgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaagcacgcttaattgctgagttctgatgg 12185051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12185297 - 12185395
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || ||||||||||||||||||| |||||| |||||||||| |||||||||||| |||| ||||||||| ||| || |||||||||    
T  12185297 aaaaaatggtggga-gaggtgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaagcacgcttaattgctgagttctgatgg 12185395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12186945 - 12187043
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || |||||||| |||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| || |||||||||    
T  12186945 aaaaaatggtggga-gaggtgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaagcacgcttaattgctgagttctgatgg 12187043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 12187289 - 12187387
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || ||||||||||||||||||| |||||| |||||||||| |||||||||||| |||| ||||||||| ||| || |||||||||    
T  12187289 aaaaaatggtggga-gaggtgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaagcacgcttaattgctgagttctgatgg 12187387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 12169482 - 12169548
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaact 244  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||| |||| |||||||||||    
T  12169482 gtgcaacacaaggacttcccaaaaggtcacccatcctagaactactctcgcccaagcacgcttaact 12169548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 12172454 - 12172508
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12172454 gtgcaatacaaggacttcccaggaggtcacccatcctagtactactctcgcccaa 12172508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 12172786 - 12172860
Alignment:
Q  185 acaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  12172786 acaaggactacccaggaggtcatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 12172860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 12173453 - 12173515
Alignment:
Q  184 cacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgc 246  Q
    |||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  12173453 cacaaggactacccaggagatcatccatcctagtactactctcgcccaaacacgcttaactgc 12173515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 12174798 - 12174876
Alignment:
Q  181 caacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  12174798 caacacaaggactacccaggagatcatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 12174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 12169167 - 12169216
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcg 227  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12169167 gtgcaatacaaggacttcccaggaggtcacccatcctagtactactctcg 12169216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 12182731 - 12182796
Alignment:
Q  181 caacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgc 246  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| ||||  ||||||||||||    
T  12182731 caacacaaggacttcccaggaggtcatccatccaagtactactctcgcccaagaacgcttaactgc 12182796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 12188956 - 12189037
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||  |||||||| || |||||||||    
T  12188956 gtgcaacacaagaacttcccaggaggtcacccatcctagaactactctcgcccaagcacaattaactgcggagttctgatgg 12189037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 12169779 - 12169843
Alignment:
Q  181 caacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactg 245  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| || | ||||||||||||    
T  12169779 caacacaatgacttcccaggaggtcacccatcatagtactactctcgccctagcacgcttaactg 12169843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12173103 - 12173174
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||| |||| || |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  12173103 aaaaaatggtggga-gatgtgcaatacaaggacttcctaggaggtcacccatcctagtactactctcgcccaa 12173174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 12186602 - 12186701
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || |||||||||||||||||| ||||||| |||||||||| |||||||||||| |||| |||| |||| ||| || |||||||||    
T  12186602 aaaaaatggtggga-gaggtgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaagcacggttaattgctgagttctgatgg 12186700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 12188596 - 12188695
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| |||| || |||||||||||||||||| ||||||| |||||||||| |||||||||||| |||| |||| |||| ||| || |||||||||    
T  12188596 aaaaaatggtggga-gaggtgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaagcacggttaattgctgagttctgatgg 12188694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 12173792 - 12173855
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactg 245  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||    
T  12173792 aacacaaggactttccaggaggtcatccatcctagtactactcccgcccaagcacgcttaactg 12173855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 12170661 - 12170726
Alignment:
Q  180 gcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactg 245  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  12170661 gcaacacaatgacttcccaggaggtcacccatcatagtactactctcgccctagcacacttaactg 12170726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 12175142 - 12175218
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| || |||| ||||||||||||| || |||||||||    
T  12175142 aacacaaggacttcccaggag-tcatccatcctagtactactcccgcccaagcacgcttaactgcggagttctgatgg 12175218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 12179251 - 12179316
Alignment:
Q  181 caacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgc 246  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||| ||||  ||||||||||||    
T  12179251 caacacaaggacttcccaggaggtcatccatcaaagtactactctcgcccaagaacgcttaactgc 12179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 12174453 - 12174524
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    ||||||||| |||| || |||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  12174453 aaaaaatggtggga-gatgtgcaatacaaggacttcctaggacgtcacccatcctagtactactctcgcccaa 12174524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 12170367 - 12170446
Alignment:
Q  180 gcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||||| || | ||| ||||||||| || |||||||||    
T  12170367 gcaacacaatgacttcctaggaggtcacccatcatagtactactctcgccctagcacccttaactgcggagttctgatgg 12170446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 4374977 - 4375062
Alignment:
Q  173 atgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatg 257  Q
    |||| |||||||||||||| |||| |||| ||||| ||||||| |||||||||||  ||| || ||||||||||||| ||||||||    
T  4374977 atgaggtgcaacacaaggatttcctaggaagtcacacatcctattactactctcgcacaagcatgcttaactgcagagttctgatg 4375062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 12176984 - 12177067
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccag--gaggtcacccatcctagtactactctcggccaaacacgcttaa 242  Q
    ||||||||| |||| || |||||||| |||||||||||    |||||||||||||||||||||||||||| |||| |||||||||    
T  12176984 aaaaaatggtggga-gaggtgcaacaaaaggacttccccctagaggtcacccatcctagtactactctcgtccaagcacgcttaa 12177067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 12186297 - 12186370
Alignment:
Q  200 gaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgat-ggatctagtgcatta 271  Q
    |||| ||||||||||||||||||||||| |||| ||||||||| ||| || ||||||| |||||| ||||||||    
T  12186297 gaggacacccatcctagtactactctcgcccaagcacgcttaattgctgagttctgatgggatctggtgcatta 12186370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 12188291 - 12188364
Alignment:
Q  200 gaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgat-ggatctagtgcatta 271  Q
    |||| ||||||||||||||||||||||| |||| ||||||||| ||| || ||||||| |||||| ||||||||    
T  12188291 gaggacacccatcctagtactactctcgcccaagcacgcttaattgctgagttctgatgggatctggtgcatta 12188364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 12170986 - 12171052
Alignment:
Q  160 aaaaaatggagggatgaagtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcg 227  Q
    |||||||||||||| || |||||||  |||||||||| |||||||||||| |||||||| || |||||    
T  12170986 aaaaaatggaggga-gaggtgcaactaaaggacttcctaggaggtcacccgtcctagtattattctcg 12171052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24621697 - 24621778
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24621697 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24621778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24622016 - 24622097
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24622016 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24622097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24622335 - 24622416
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24622335 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24622416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24622619 - 24622700
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24622619 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24622700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24622903 - 24622984
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24622903 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24622984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24623506 - 24623587
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24623506 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24623587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24623825 - 24623906
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24623825 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24623906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24624418 - 24624499
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24624418 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24624499  T

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Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24624737 - 24624818
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24624737 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24624818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24625021 - 24625102
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24625021 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24625102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24625340 - 24625421
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24625340 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24626913 - 24626994
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24626913 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24626994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24631399 - 24631480
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24631399 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24631480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24631718 - 24631799
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24631718 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24631799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24632002 - 24632083
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24632002 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24632083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24632286 - 24632367
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24632286 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24632605 - 24632686
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24632605 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24632686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24632889 - 24632970
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24632889 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24632970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24633173 - 24633254
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24633173 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24633254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24633492 - 24633573
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24633492 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24633573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24633811 - 24633892
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24633811 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24633892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24634095 - 24634176
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24634095 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24634176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24634698 - 24634779
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24634698 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24634779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24638777 - 24638858
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24638777 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24638858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24639096 - 24639177
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24639096 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24639177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24623222 - 24623303
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| || |||||||||    
T  24623222 gtgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaagcacgcttaactgcggagttctgatgg 24623303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24627232 - 24627313
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| || |||||||||    
T  24627232 gtgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaagcacgcttaactgcggagttctgatgg 24627313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24627516 - 24627597
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24627516 gtgcaacacaangacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24627597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24631115 - 24631196
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24631115 gtgcaacacaaggacttcccangaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24631196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 3348064 - 3348145
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  3348064 gtgcaacacaaggacttcctaggaggtcacccatcctagtactactctcgtccaagcacgcttaactgcggagttctgatgg 3348145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24625982 - 24626063
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24625982 gtgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24626063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24634414 - 24634495
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| || |||||||||    
T  24634414 gtgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaagcacgcttaactgcggagttctgatgg 24634495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24638458 - 24638539
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| || |||||||||    
T  24638458 gtgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaagcacgcttaactgcggagttctgatgg 24638539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 24626302 - 24626354
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggcc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24626302 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggcc 24626354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24620764 - 24620848
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatc---ctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24620764 gtgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24620848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 24619616 - 24619687
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatc---ctagtactactctcggccaaacacgcttaactgc 246  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||||    
T  24619616 gtgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaagcacgcttaactgc 24619687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24621086 - 24621171
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24621086 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24621171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24621409 - 24621494
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat----cctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24621409 gtgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24625659 - 24625744
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat----cctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24625659 gtgcaacacaaggacttcccaggaggtcacccatccancctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24625744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24626625 - 24626710
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat----cctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24626625 gtgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24626710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24635569 - 24635654
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24635569 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24635654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24636270 - 24636355
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24636270 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24636355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24636593 - 24636678
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24636593 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24636678  T

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Target: chr2; HSP #44
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24637518 - 24637603
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat----cctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24637518 gtgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24637603  T

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Target: chr2; HSP #45
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 24637841 - 24637893
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggcc 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24637841 gtgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcggcc 24637893  T

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Target: chr2; HSP #46
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24639445 - 24639530
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24639445 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24639530  T

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Target: chr2; HSP #47
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24639768 - 24639853
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccat----cctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24639768 gtgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24639853  T

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Target: chr2; HSP #48
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24640091 - 24640176
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24640091 gtgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24640176  T

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Target: chr2; HSP #49
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24635246 - 24635331
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||| |||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24635246 gtgcaacacaaggacttcccnggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24635331  T

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Target: chr2; HSP #50
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 24636916 - 24637001
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcac----ccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||| |||||||||    |||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24636916 gtgcaacacaaggacttccctggaggtcacccatccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24637001  T

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Target: chr2; HSP #51
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 24630857 - 24630912
Alignment:
Q  204 tcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  24630857 tcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 24630912  T

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Target: chr2; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 38802330 - 38802380
Alignment:
Q  198 aggaggtcacccatcctagtactactctcggccaaacacgcttaactgcag 248  Q
    ||||||||| |||| ||| ||||||||| | ||||||||||||||||||||    
T  38802330 aggaggtcatccatactattactactcttgtccaaacacgcttaactgcag 38802380  T

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Target: scaffold1024 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 108 - 27
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  108 gtgcaacacacggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttctgatgg 27  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 14903213 - 14903159
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 232  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  14903213 gtgcaacacaaggacttttcaggaggtcacccatcctagtactactctcgcccaa 14903159  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 16990144 - 16990067
Alignment:
Q  182 aacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga-ttctgatgg 258  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||| |||| |||| |||||||| || |||||||||    
T  16990144 aacacaaggacttcccaataggtcactcatcctagtactactctcgcccaagcacgtttaactgcggagttctgatgg 16990067  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 3732761 - 3732693
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgc 246  Q
    |||||||||||||||||   | ||||||||||||  |||||||||| ||| ||||  ||||||||||||    
T  3732761 gtgcaacacaaggacttttgaagaggtcacccattttagtactactttcgcccaagtacgcttaactgc 3732693  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 30729417 - 30729485
Alignment:
Q  177 agtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactg 245  Q
    |||||||||||| |||||  ||| ||||||||||||||| | |||||||||  ||| |||| |||||||    
T  30729417 agtgcaacacaatgacttttcagaaggtcacccatcctaatgctactctcgttcaagcacgtttaactg 30729485  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 13642551 - 13642504
Alignment:
Q  179 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctc 226  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  13642551 tgcaacacaaggatttcccatgaggtcacccatcttagtactactctc 13642504  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 13742963 - 13742916
Alignment:
Q  179 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctc 226  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  13742963 tgcaacacgaggacttcccatgaggtcacccatcttagtactactctc 13742916  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 15246341 - 15246388
Alignment:
Q  178 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactct 225  Q
    |||||||||||||||||  |||||||||||| ||||||||||| ||||    
T  15246341 gtgcaacacaaggacttttcaggaggtcacctatcctagtactgctct 15246388  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 44836797 - 44836736
Alignment:
Q  198 aggaggtcacccatcctagtactactctcggccaaacacgcttaactgc-agattctgatgg 258  Q
    |||||||||||||||||| ||| ||||||| ||||||| | |||||||| | ||||||||||    
T  44836797 aggaggtcacccatcctaatacaactctcgcccaaacatgtttaactgcgaaattctgatgg 44836736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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