View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_1 (Length: 1005)
Name: NF12671_high_1
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 511 - 987
Target Start/End: Original strand, 29042972 - 29043437
Alignment:
| Q |
511 |
gagactctataataggtagtgagaaattgaacaaaaatagaaattattgtccttactaagatatgagacaannnnnnngtctagaatacatattatcaaa |
610 |
Q |
| |
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| T |
29042972 |
gagactctacgataggtagcgagaaattgaacaaaaataaaaattattgtccttactaagtcatgagacaatttttt-gtccagaatacatactatcaaa |
29043070 |
T |
|
| Q |
611 |
aatatcaaattacaattttgggttaatatgtctttatttttgaacatgaaaaagtattattttttaactgtacgattatgcct-------tatcatgtac |
703 |
Q |
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| T |
29043071 |
aatatcaaattacaattctt------tat---tttatttttgtacataaaaaagtattatttttctatggtacaattatgcctcatcagttatcatatac |
29043161 |
T |
|
| Q |
704 |
ttttttaactagtattcaatgacttgtgaatcaaacgctccataaaattttactcttgccaa-aaaatgctaaaacgttaagctgattttgtggtgttgt |
802 |
Q |
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| T |
29043162 |
ttttt-aactagtattcaatgatttgtgaatcaaacgctccataaaattttactcttgccaagaaaatgctaagtcg--------attttgtgatgttga |
29043252 |
T |
|
| Q |
803 |
gtttgacaaaaaccacaaattccaagacttataatatagaggatgagttgactataaagtttataatatttttctacccatgcatgattggtgcaataat |
902 |
Q |
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||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29043253 |
gttagacaaaaatcacaaattgtaagacatataatatagagcatgagttgactataaagtttataatgtttttctacccatgcatgattggtgcaataat |
29043352 |
T |
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| Q |
903 |
tgaattaaaaggctacttaaactctcaagataggaacatgacgacttgcaaatatttttgtacaagtctttgtttaagacaaaat |
987 |
Q |
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| T |
29043353 |
tgaataaaaaggctacttaaactctcaagataggaacatgacgacttgcaaatatttttgtacaagtctttgtttaagacaaaat |
29043437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 29041547 - 29041798
Alignment:
| Q |
6 |
caatgagatggacatcaaaatttgg-ttctggctcttataagatatgagttggattattaccaattaaaccaaatatttgttggtatttattatttcttt |
104 |
Q |
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|||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041547 |
caataagatggacaacaaagtttgggttctggctcttataagatatgagttggattattaccaattaaaccaaatatttgttggtatttattatttcttt |
29041646 |
T |
|
| Q |
105 |
tatttatcagaagttttgacttggtcatttttgggtagatttctagacttgacttgatcttcttttctcatttatgatcttacc--tatcttatcactat |
202 |
Q |
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| T |
29041647 |
tatttatcagaagttttgacttggtcatttttgggtagatttctagacttgacttgatcttcttttctcatttatgatcttacctatatcttaccactat |
29041746 |
T |
|
| Q |
203 |
g--gtatatgctattccggtgcaagtttattttgaggtacaattcttatata |
252 |
Q |
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| T |
29041747 |
gatatatatgctattcaggtgcaagtttattttgaggtacaattcttatata |
29041798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 276 - 450
Target Start/End: Original strand, 29041946 - 29042115
Alignment:
| Q |
276 |
taaataaatttgtttgaagtagataaaaataatatattattggagtagcttaaaataaaacgtactcaaatcatttaagatannnnnnnnnggggtagcc |
375 |
Q |
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||||||| ||||||||| ||||||||||||| ||||||| | | ||||||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
29041946 |
taaataagtttgtttgaggtagataaaaata---tattattagggcagcttaaaataaaacttactcaaatcattcaagataattttttt---ggtagcc |
29042039 |
T |
|
| Q |
376 |
-aaagctaccctattctcacaagaggtttcgccaatgagcctacttattcctcttgtaaaggtgaatttattgtca |
450 |
Q |
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| T |
29042040 |
caaagctaccctattctcacaagagattccgccaatgaacctacttattccctttataaaggtaaatttatagtca |
29042115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 40431843 - 40431894
Alignment:
| Q |
306 |
aatatattattggagtagcttaaaataaaacgtactcaaatcatttaagata |
357 |
Q |
| |
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|||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
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| T |
40431843 |
aatatattattgaagtagcttaaaataaaatgcactcaaatcatttaagata |
40431894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 15235997 - 15235964
Alignment:
| Q |
437 |
tgaatttattgtcactaggttatttgacaaaaaa |
470 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
15235997 |
tgaatttatagtcactaggttatttgacaaaaaa |
15235964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 38212361 - 38212310
Alignment:
| Q |
306 |
aatatattattggagtagcttaaaataaaacgtactcaaatcatttaagata |
357 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
38212361 |
aatattttattggagtagcttaaaataaaatgtactcaaatcattcaagata |
38212310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 17548136 - 17548169
Alignment:
| Q |
437 |
tgaatttattgtcactaggttatttgacaaaaaa |
470 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
17548136 |
tgaatttatagtcactaggttatttgacaaaaaa |
17548169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 26684066 - 26684099
Alignment:
| Q |
320 |
gtagcttaaaataaaacgtactcaaatcatttaa |
353 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
26684066 |
gtagcttaaaataaaatgtactcaaatcatttaa |
26684099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 26953794 - 26953827
Alignment:
| Q |
320 |
gtagcttaaaataaaacgtactcaaatcatttaa |
353 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
26953794 |
gtagcttaaaataaaatgtactcaaatcatttaa |
26953827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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