View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12671_high_12 (Length: 344)

Name: NF12671_high_12
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12671_high_12
NF12671_high_12
[»] chr6 (8 HSPs)
chr6 (173-338)||(5179164-5179329)
chr6 (177-326)||(5280982-5281131)
chr6 (10-176)||(5178927-5179093)
chr6 (10-176)||(5280741-5280907)
chr6 (23-111)||(5138033-5138121)
chr6 (243-310)||(30364244-30364313)
chr6 (248-338)||(2359271-2359363)
chr6 (243-336)||(8479625-8479720)
[»] scaffold0294 (1 HSPs)
scaffold0294 (236-338)||(2726-2829)
[»] chr5 (2 HSPs)
chr5 (28-111)||(5924156-5924239)
chr5 (262-323)||(42910645-42910706)
[»] chr2 (1 HSPs)
chr2 (262-334)||(9267111-9267183)
[»] chr7 (2 HSPs)
chr7 (273-336)||(46639848-46639911)
chr7 (248-295)||(5908855-5908903)
[»] chr3 (2 HSPs)
chr3 (262-336)||(18373101-18373175)
chr3 (262-292)||(48903729-48903759)
[»] chr8 (2 HSPs)
chr8 (262-334)||(34051062-34051134)
chr8 (262-337)||(31475454-31475529)
[»] chr4 (1 HSPs)
chr4 (273-336)||(39129004-39129067)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 5179164 - 5179329
Alignment:
Q  173 atgtaattataattaatattgcagtcttttgaaaacaaaggaattataatcctctcaattcgtttcttttaatagattctctcaagtgtattctctcaat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  5179164 atgtaattataattaatattgcagtcttttgaaaacaaaggaattataatcctctcaattcttttcttttaatagattctctcaagcgtattctctcaat 5179263  T
Q  273 ttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179264 ttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctct 5179329  T

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Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 5280982 - 5281131
Alignment:
Q  177 aattataattaatattgcagtcttttgaaaacaaaggaattataatcctctcaattcgtttcttttaatagattctctcaagtgtattctctcaattttt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5280982 aattataattaatattgcagtcttttgaaaacaaaggaattataatcctctcaattcgtttcttttaatagattctctcaagtgtattctctcaattttt 5281081  T
Q  277 ctcaattgttacatctcaaccacgcatttaatattctcttttctttacaa 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5281082 ctcaattgttacatctcaaccacgcatttaatattctcttttctttacaa 5281131  T

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Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 5178927 - 5179093
Alignment:
Q  10 gtggagaatcagagtgcaagaaactgatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttatgttggtgtaatctgcttttac 109  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  5178927 gtggagaagcacggtgcgagaaactgatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttacgttggtgtaatctgctttcac 5179026  T
Q  110 catgcttgatttggaaactctattaagaatcattttctcgactaattatgctggatcccgatgatgt 176  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179027 catgctcgatttggaaacgctattaagaatcattttctcgactaattatgctggatcccgatgatgt 5179093  T

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Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 5280741 - 5280907
Alignment:
Q  10 gtggagaatcagagtgcaagaaactgatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttatgttggtgtaatctgcttttac 109  Q
    |||||||| ||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  5280741 gtggagaagcatggtgcgagaaactcatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcagtttacgttggtgtaatctgctttcac 5280840  T
Q  110 catgcttgatttggaaactctattaagaatcattttctcgactaattatgctggatcccgatgatgt 176  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5280841 catgctcgatttggaaacgctattaagaatcattttctcgactaattatgctggatcccgatgatgt 5280907  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 5138121 - 5138033
Alignment:
Q  23 gtgcaagaaactgatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttatgttggtgtaatctgcttttacca 111  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||    
T  5138121 gtgcgagaaactggtcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttaccttggtgtaatcagctttcacca 5138033  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 30364244 - 30364313
Alignment:
Q  243 aatagattctctcaagtgta-ttctctcaatttt-tctcaattgttacatctcaaccacgcatttaatat 310  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30364244 aatagattctctcaagtgtaattctctcaattttttctcaattgttacatctcaaccacacatttaatat 30364313  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 2359271 - 2359363
Alignment:
Q  248 attctctcaagtgta--ttctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctct 338  Q
    |||||||||||||||  || | | |||||||||| |||||||||| ||||||||  ||| |||||| |||||||  || ||||||||||||||    
T  2359271 attctctcaagtgtaattttttttaatttttctctattgttacatttcaaccacatattcaatattatcttttcaatataattttatatctct 2359363  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 8479720 - 8479625
Alignment:
Q  243 aatagattctctcaagtgta-ttctctcaa-tttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatct 336  Q
    |||||||||||||||  ||| ||| ||||| ||||||||||||| |||||||||||||| ||  ||||||| | |||| |||| ||||||| ||||    
T  8479720 aatagattctctcaaaggtaattccctcaaatttttctcaattggtacatctcaaccacacacataatattgtattttatttataattttagatct 8479625  T

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Target: scaffold0294 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 2829 - 2726
Alignment:
Q  236 ttcttttaatagattctctcaagtgtatt-ctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatat 334  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  2829 ttcttttaatagattctctcaagtgtatttctctcaatttttctcaattgttacatttcaaccacacatttaatattctcttttctttacaattttatat 2730  T
Q  335 ctct 338  Q
    ||||    
T  2729 ctct 2726  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 5924239 - 5924156
Alignment:
Q  28 agaaactgatcgattctaagcaaatcgataccaggccggtcagggaaatcatgcaggttatgttggtgtaatctgcttttacca 111  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||    
T  5924239 agaaactggtcgattataagcaaatcgataccaggccggtctgggaaatcatgcaggttacgttggtgtaatcagctttcacca 5924156  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 42910645 - 42910706
Alignment:
Q  262 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttcttta 323  Q
    |||||||| ||||||| || |||||||||||||||||| |||| | ||| ||||||||||||    
T  42910645 attctctccatttttcacatttgttacatctcaaccacacattcattatcctcttttcttta 42910706  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 9267111 - 9267183
Alignment:
Q  262 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatat 334  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||| |||| ||||||||| ||||||||||    
T  9267111 attctctcaatttttcacaattgttacatatccaccacaaatttaatcttcttttttctttataattttatat 9267183  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 46639848 - 46639911
Alignment:
Q  273 ttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatct 336  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||||||||| ||| ||||||||    
T  46639848 ttttctcaattgctacatctcaaccacgcactcaatatcctcttttctttataatattatatct 46639911  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 5908855 - 5908903
Alignment:
Q  248 attctctcaagtgta-ttctctcaatttttctcaattgttacatctcaa 295  Q
    ||||||||||||| | ||||||  |||||||||||||||||||||||||    
T  5908855 attctctcaagtgaaattctcttcatttttctcaattgttacatctcaa 5908903  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 18373175 - 18373101
Alignment:
Q  262 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatct 336  Q
    ||||||||  ||||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||| ||||||||    
T  18373175 attctctccttttttctcaattgttacatctcaaccacgcactcattatcctctttactttataatattatatct 18373101  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 48903729 - 48903759
Alignment:
Q  262 attctctcaatttttctcaattgttacatct 292  Q
    |||||||||||||||||||||||||||||||    
T  48903729 attctctcaatttttctcaattgttacatct 48903759  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 34051062 - 34051134
Alignment:
Q  262 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatat 334  Q
    |||||||| |||||||| ||||||| ||||||||||   |||| |||||| ||||||||||| ||| ||||||    
T  34051062 attctctctatttttcttaattgtttcatctcaaccttacattaaatattatcttttctttataatattatat 34051134  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 31475529 - 31475454
Alignment:
Q  262 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctc 337  Q
    |||||||| |||||||| || ||||| ||||||||||| |||| ||||| ||||||| |||| | | |||||||||    
T  31475529 attctctccatttttcttaaatgttaaatctcaaccacacattcaatatcctcttttatttagattattatatctc 31475454  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 39129004 - 39129067
Alignment:
Q  273 ttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatct 336  Q
    |||||||||||||||||||| ||||||  | | ||| |  ||||||||||||||||||||||||    
T  39129004 ttttctcaattgttacatcttaaccacaaactcaatgtcatcttttctttacaattttatatct 39129067  T

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