View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_18 (Length: 301)
Name: NF12671_high_18
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 22363228 - 22363109
Alignment:
| Q |
168 |
gtgtgactcaatttagtatattttttcttctcaaaatttaacatcacaattttaaagcttctattgccttgaagcaacaagtgaacatcaagtcattaga |
267 |
Q |
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| T |
22363228 |
gtgtgactcaatttagtatttttttacttctcaaaatttaacatcacaattttaaagcttctattgccttgaagcaacaagtgaacatcaagtcattaga |
22363129 |
T |
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| Q |
268 |
gaaatttagagtgaaatttt |
287 |
Q |
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| T |
22363128 |
gaaatttagagtgaaatttt |
22363109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 22363319 - 22363245
Alignment:
| Q |
109 |
atagaactagagaatacaaggaactacgcctaaagtatgaagagttaatatgcatttttgtgtgactcaatttag |
183 |
Q |
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| T |
22363319 |
atagaactagagaatacaaggaactaggcctaaagtatgaagagttaatatgcatttttgtgtgactcaatttag |
22363245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 22363377 - 22363340
Alignment:
| Q |
73 |
aagtgttggtgttgtgtcggtgcctggacacacttaat |
110 |
Q |
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| T |
22363377 |
aagtgttggtgttgtgtcggtgcctggacacacttaat |
22363340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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